Male CNS – Cell Type Explorer

aMe6a(L)

2
Total Neurons
Right: 1 | Left: 1
log ratio : 0.00
1,710
Total Synapses
Post: 1,154 | Pre: 556
log ratio : -1.05
1,710
Mean Synapses
Post: 1,154 | Pre: 556
log ratio : -1.05
ACh(92.8% CL)
Neurotransmitter

Mean Synapse Count per Layer

 
Post
Pre
LA
-
-
ME 1ME 2ME 3ME 4ME 5ME 6ME 7ME 8ME 9ME 10Total
-215--------
-----------
 
Post
Pre
LO 1LO 2LO 3LO 4LO 5ALO 5BLO 6Total
--------
--------
AME
242
5
 
Post
Pre
LOP 1LOP 2LOP 3LOP 4Total
-----
-----
central brain
253
531

Population spatial coverage

Neuron Visualization

Dark Light

Navigation

🖱️ Left Mouse Button (LMB) + Drag
Rotate the view.
Shift + 🖱️ LMB + Drag
Translate the view.
Ctrl + Mousewheel
Zoom in and out.
⌨️ z
Reset view to closest
⌨️ o
Toggle between orthographic and perspective projection.
⌨️ l
Reassign random colors to neurons and ROI meshes.

Filtering

screenshot of neuroglancer filter section
1
Use text to filter neurons by type name.

2
Use tags to require or exclude neurons of certain properties, e.g. `soma_side`.

3
Add / remove matched neurons from view.

4
Remove currently selected neurons from view.

5
Toggle individual neurons from view.
?

ROI Innervation (5 ROIs)

ROI Name
In
%
In
log
ratio

Out
%
Out
PLP(L)21218.4%1.2249488.8%
Optic-unspecified(L)64255.6%-5.00203.6%
AME(L)24221.0%-5.6050.9%
CentralBrain-unspecified413.6%-0.15376.7%
ME(L)171.5%-inf00.0%

Connectivity

Inputs

upstream
partner
#NTconns
aMe6a
%
In
CV
aMe4 (L)9ACh29427.2%0.3
HBeyelet (L)4HA23421.7%0.3
MeVPMe12 (R)2ACh16915.6%0.0
OCG02c (R)2ACh545.0%0.7
MeVPaMe2 (R)1Glu474.4%0.0
aMe12 (L)4ACh454.2%0.3
OA-AL2i3 (L)2OA353.2%0.1
MeVCMe1 (R)2ACh262.4%0.4
MeVC20 (L)2Glu222.0%0.5
aMe1 (L)2GABA191.8%0.7
MeVCMe1 (L)2ACh181.7%0.6
OCG02c (L)2ACh181.7%0.2
LoVC20 (R)1GABA100.9%0.0
LPT51 (L)2Glu100.9%0.4
SLP003 (L)1GABA90.8%0.0
aMe30 (L)3Glu80.7%0.2
LoVP96 (L)1Glu70.6%0.0
aMe5 (L)5ACh70.6%0.6
PLP080 (L)1Glu40.4%0.0
PLP246 (L)1ACh30.3%0.0
aMe6b (L)1ACh30.3%0.0
MeVPMe3 (R)1Glu30.3%0.0
LoVCLo3 (R)1OA30.3%0.0
MeVP5 (L)2ACh30.3%0.3
MeVP4 (L)1ACh20.2%0.0
PS272 (R)1ACh20.2%0.0
aMe6c (L)1Glu20.2%0.0
CL063 (L)1GABA20.2%0.0
DNp32 (L)1unc10.1%0.0
AN27X013 (L)1unc10.1%0.0
LoVC23 (R)1GABA10.1%0.0
aMe2 (L)1Glu10.1%0.0
DNc01 (R)1unc10.1%0.0
MeVP3 (L)1ACh10.1%0.0
LPC2 (L)1ACh10.1%0.0
AOTU055 (L)1GABA10.1%0.0
MeVP11 (L)1ACh10.1%0.0
LHPV2g1 (L)1ACh10.1%0.0
Cm26 (L)1Glu10.1%0.0
SAD044 (L)1ACh10.1%0.0
aMe17b (L)1GABA10.1%0.0
aMe3 (L)1Glu10.1%0.0
aMe12 (R)1ACh10.1%0.0
LT58 (L)1Glu10.1%0.0
MeVP57 (R)1Glu10.1%0.0
MeVC21 (L)1Glu10.1%0.0
l-LNv (R)1unc10.1%0.0
LoVCLo3 (L)1OA10.1%0.0
DNpe053 (L)1ACh10.1%0.0

Outputs

downstream
partner
#NTconns
aMe6a
%
Out
CV
aMe30 (L)3Glu24918.2%0.3
PLP080 (L)1Glu17312.7%0.0
LoVP96 (L)1Glu14710.8%0.0
aMe1 (L)2GABA1188.6%0.4
DNpe021 (L)1ACh866.3%0.0
LoVP53 (L)1ACh493.6%0.0
KCg-s1 (L)1DA473.4%0.0
OCG02c (R)2ACh332.4%0.2
PLP211 (L)1unc282.1%0.0
aMe2 (L)2Glu272.0%0.7
SLP250 (L)1Glu261.9%0.0
AOTU054 (L)2GABA251.8%0.2
LoVP100 (L)1ACh231.7%0.0
aMe_TBD1 (L)1GABA221.6%0.0
MeVC20 (L)2Glu211.5%0.3
CB3001 (L)1ACh151.1%0.0
LT58 (L)1Glu151.1%0.0
LoVP50 (L)3ACh151.1%0.6
MeVC21 (L)2Glu141.0%0.6
LoVP38 (L)2Glu120.9%0.8
PLP250 (L)1GABA110.8%0.0
OCG02c (L)2ACh100.7%0.0
WEDPN6B (L)1GABA90.7%0.0
LPT51 (L)1Glu90.7%0.0
DNb05 (L)1ACh80.6%0.0
Lat2 (L)2unc80.6%0.0
SLP003 (L)1GABA70.5%0.0
MeVP12 (L)5ACh70.5%0.3
aMe5 (L)4ACh60.4%0.3
MeVPMe11 (R)1Glu50.4%0.0
aMe17c (L)2Glu50.4%0.6
MeVP4 (L)4ACh50.4%0.3
DNp27 (L)1ACh40.3%0.0
LoVP81 (L)1ACh40.3%0.0
aMe13 (L)1ACh40.3%0.0
MeVP32 (L)1ACh40.3%0.0
aMe8 (L)2unc40.3%0.5
Lat1 (L)2unc40.3%0.5
aMe17b (L)2GABA40.3%0.5
LoVP83 (L)1ACh30.2%0.0
MeLo1 (L)1ACh30.2%0.0
SLP249 (L)1Glu30.2%0.0
MeVPaMe1 (R)1ACh30.2%0.0
LAL047 (L)1GABA30.2%0.0
DNp31 (L)1ACh30.2%0.0
LoVC18 (L)2DA30.2%0.3
aMe4 (L)3ACh30.2%0.0
MeVP5 (L)3ACh30.2%0.0
MeVC23 (L)1Glu20.1%0.0
WEDPN11 (L)1Glu20.1%0.0
PLP037 (L)1Glu20.1%0.0
PLP142 (L)1GABA20.1%0.0
SMP200 (L)1Glu20.1%0.0
aMe3 (L)1Glu20.1%0.0
Lat5 (L)1unc20.1%0.0
LoVC23 (R)1GABA20.1%0.0
MeVPMe3 (R)1Glu20.1%0.0
MeVP29 (L)1ACh20.1%0.0
CL365 (L)1unc20.1%0.0
LoVP54 (L)1ACh20.1%0.0
LPT60 (L)1ACh20.1%0.0
CL063 (L)1GABA20.1%0.0
MeVP28 (L)1ACh20.1%0.0
MeVP3 (L)2ACh20.1%0.0
PLP069 (L)2Glu20.1%0.0
DNp32 (L)1unc10.1%0.0
LoVP28 (L)1ACh10.1%0.0
PLP246 (L)1ACh10.1%0.0
aMe22 (L)1Glu10.1%0.0
PLP144 (L)1GABA10.1%0.0
AOTU058 (L)1GABA10.1%0.0
aMe_unclear (L)1Glu10.1%0.0
CL125 (L)1Glu10.1%0.0
CB4073 (L)1ACh10.1%0.0
LoVP44 (L)1ACh10.1%0.0
LC37 (L)1Glu10.1%0.0
Cm23 (L)1Glu10.1%0.0
CL283_a (L)1Glu10.1%0.0
MeVC24 (L)1Glu10.1%0.0
MeLo6 (L)1ACh10.1%0.0
MeVP14 (L)1ACh10.1%0.0
LPT111 (L)1GABA10.1%0.0
MeVP11 (L)1ACh10.1%0.0
SMP045 (L)1Glu10.1%0.0
s-LNv (L)1ACh10.1%0.0
ATL042 (L)1unc10.1%0.0
l-LNv (L)1unc10.1%0.0
aMe10 (L)1ACh10.1%0.0
SAD044 (L)1ACh10.1%0.0
aMe24 (L)1Glu10.1%0.0
CL012 (L)1ACh10.1%0.0
LT72 (L)1ACh10.1%0.0
MeVP30 (L)1ACh10.1%0.0
aMe15 (L)1ACh10.1%0.0
aMe20 (L)1ACh10.1%0.0
aMe12 (L)1ACh10.1%0.0
MeVP49 (L)1Glu10.1%0.0
LT88 (L)1Glu10.1%0.0
PLP079 (L)1Glu10.1%0.0
MeVC22 (L)1Glu10.1%0.0
AN19B019 (R)1ACh10.1%0.0
LoVCLo3 (L)1OA10.1%0.0
aMe17e (L)1Glu10.1%0.0
LoVCLo3 (R)1OA10.1%0.0
aMe17a (L)1unc10.1%0.0
mALD1 (R)1GABA10.1%0.0