Male CNS – Cell Type Explorer

VST1(R)

5
Total Neurons
Right: 3 | Left: 2
log ratio : -0.58
6,776
Total Synapses
Post: 6,041 | Pre: 735
log ratio : -3.04
2,258.7
Mean Synapses
Post: 2,013.7 | Pre: 245
log ratio : -3.04
ACh(93.5% CL)
Neurotransmitter

Mean Synapse Count per Layer

 
Post
Pre
LA
-
-
ME 1ME 2ME 3ME 4ME 5ME 6ME 7ME 8ME 9ME 10Total
-----------
-----------
 
Post
Pre
LO 1LO 2LO 3LO 4LO 5ALO 5BLO 6Total
--------
--------
AME
-
-
 
Post
Pre
LOP 1LOP 2LOP 3LOP 4Total
88165.31,6971,878.3
--4.78084.7
central brain
133
159

Population spatial coverage

Neuron Visualization

Dark Light

Navigation

🖱️ Left Mouse Button (LMB) + Drag
Rotate the view.
Shift + 🖱️ LMB + Drag
Translate the view.
Ctrl + Mousewheel
Zoom in and out.
⌨️ z
Reset view to closest
⌨️ o
Toggle between orthographic and perspective projection.
⌨️ l
Reassign random colors to neurons and ROI meshes.

Filtering

screenshot of neuroglancer filter section
1
Use text to filter neurons by type name.

2
Use tags to require or exclude neurons of certain properties, e.g. `soma_side`.

3
Add / remove matched neurons from view.

4
Remove currently selected neurons from view.

5
Toggle individual neurons from view.
?

ROI Innervation (5 ROIs)

ROI Name
In
%
In
log
ratio

Out
%
Out
LOP(R)5,62793.1%-4.4725434.6%
IPS(R)3155.2%0.3740655.2%
SPS(R)400.7%0.81709.5%
CentralBrain-unspecified440.7%-5.4610.1%
Optic-unspecified(R)150.2%-1.9140.5%

Connectivity

Inputs

upstream
partner
#NTconns
VST1
%
In
CV
T5d (R)481ACh793.340.0%0.7
T4d (R)480ACh731.736.9%0.7
LPi34 (R)47Glu186.79.4%0.8
PS078 (R)3GABA54.32.7%0.2
LPi4b (R)1GABA25.71.3%0.0
Tlp14 (R)17Glu19.71.0%0.6
PS174 (L)1Glu13.70.7%0.0
CB1792 (R)1GABA130.7%0.0
Y3 (R)27ACh12.30.6%0.4
PS078 (L)3GABA120.6%0.6
Y12 (R)24Glu11.30.6%0.6
TmY5a (R)23Glu8.70.4%0.3
PS072 (R)2GABA7.30.4%0.6
Tlp12 (R)16Glu6.70.3%0.3
VSm (R)2ACh5.30.3%0.2
TmY17 (R)8ACh50.3%0.3
TmY13 (R)10ACh4.30.2%0.4
Am1 (R)1GABA3.30.2%0.0
CB1792 (L)2GABA3.30.2%0.6
VST2 (R)4ACh3.30.2%0.6
LPi3b (R)7Glu3.30.2%0.3
TmY20 (R)10ACh3.30.2%0.0
VST1 (R)2ACh30.2%0.1
TmY4 (R)7ACh30.2%0.4
PS303 (L)1ACh2.70.1%0.0
dCal1 (L)1GABA2.30.1%0.0
LPi3412 (R)4Glu2.30.1%0.5
LPT111 (R)6GABA20.1%0.0
LPi2b (R)1GABA1.70.1%0.0
T5a (R)3ACh1.70.1%0.3
LPLC4 (R)4ACh1.70.1%0.3
OA-AL2i1 (R)1unc1.70.1%0.0
Y11 (R)4Glu1.70.1%0.3
DCH (L)1GABA1.30.1%0.0
LPi4a (R)3Glu1.30.1%0.4
LOLP1 (R)4GABA1.30.1%0.0
GNG547 (R)1GABA10.1%0.0
MeVP6_unclear (R)1Glu10.1%0.0
LPT26 (R)1ACh10.1%0.0
PS061 (L)1ACh10.1%0.0
AN06B009 (L)1GABA10.1%0.0
PS172 (L)1Glu10.1%0.0
VCH (L)1GABA10.1%0.0
PS070 (R)1GABA10.1%0.0
T4a (R)2ACh10.1%0.3
PS213 (L)1Glu10.1%0.0
MeVPLp1 (L)1ACh10.1%0.0
LPT29 (R)1ACh10.1%0.0
OLVC3 (L)1ACh10.1%0.0
VS (R)2ACh10.1%0.3
LPT112 (R)3GABA10.1%0.0
LLPC3 (R)3ACh10.1%0.0
TmY3 (R)2ACh10.1%0.3
WED121 (R)1GABA0.70.0%0.0
LPi3c (R)2Glu0.70.0%0.0
LPi2e (R)2Glu0.70.0%0.0
LPC1 (R)2ACh0.70.0%0.0
TmY14 (R)2unc0.70.0%0.0
LPT49 (R)1ACh0.70.0%0.0
DNp17 (R)1ACh0.30.0%0.0
LPi3a (R)1Glu0.30.0%0.0
PS331 (R)1GABA0.30.0%0.0
LPT113 (R)1GABA0.30.0%0.0
Tlp11 (R)1Glu0.30.0%0.0
LPi43 (R)1Glu0.30.0%0.0
LPLC2 (R)1ACh0.30.0%0.0
LPT27 (R)1ACh0.30.0%0.0
LoVC22 (L)1DA0.30.0%0.0
LPT54 (R)1ACh0.30.0%0.0
LPC2 (R)1ACh0.30.0%0.0
PS055 (R)1GABA0.30.0%0.0
T5c (R)1ACh0.30.0%0.0
PS341 (L)1ACh0.30.0%0.0
LLPC1 (R)1ACh0.30.0%0.0
PS237 (R)1ACh0.30.0%0.0
PS313 (R)1ACh0.30.0%0.0
MeVPMe2 (R)1Glu0.30.0%0.0
MeVPLp1 (R)1ACh0.30.0%0.0
HSS (R)1ACh0.30.0%0.0

Outputs

downstream
partner
#NTconns
VST1
%
Out
CV
V1 (R)1ACh83.313.1%0.0
PS237 (R)2ACh61.79.7%0.1
PS213 (R)1Glu49.77.8%0.0
LPi3a (R)33Glu45.77.2%0.8
LPi3412 (R)36Glu416.4%0.6
DNge043 (R)1ACh39.36.2%0.0
LPi34 (R)26Glu345.3%0.6
DNpe008 (R)6ACh19.73.1%1.2
DNp17 (R)5ACh182.8%0.5
DNg46 (R)1Glu14.32.2%0.0
DNpe054 (R)4ACh13.32.1%0.8
DNg94 (R)1ACh12.72.0%0.0
VSm (R)2ACh12.72.0%0.1
DNp53 (R)1ACh11.71.8%0.0
LPLC4 (R)15ACh9.71.5%0.6
DNp53 (L)1ACh9.31.5%0.0
LPi4b (R)1GABA8.31.3%0.0
vCal2 (R)1Glu81.3%0.0
PS061 (L)1ACh7.71.2%0.0
PS352 (R)1ACh6.71.0%0.0
DNge097 (R)1Glu6.31.0%0.0
LPi4a (R)11Glu60.9%0.6
PS341 (L)2ACh5.70.9%0.5
Y3 (R)14ACh5.70.9%0.5
GNG520 (L)1Glu50.8%0.0
LPT51 (R)2Glu4.70.7%0.1
T4d (R)13ACh4.70.7%0.2
Y12 (R)11Glu4.70.7%0.3
PS126 (R)1ACh40.6%0.0
LPLC2 (R)10ACh40.6%0.3
LoVC22 (L)2DA3.70.6%0.1
T5d (R)10ACh3.30.5%0.0
PS170 (R)1ACh30.5%0.0
LPT49 (R)1ACh30.5%0.0
PS300 (R)1Glu30.5%0.0
VST1 (R)3ACh30.5%0.5
LPi3b (R)5Glu30.5%0.4
Tlp12 (R)7Glu2.70.4%0.3
PS074 (R)1GABA2.30.4%0.0
PS313 (R)1ACh2.30.4%0.0
LOLP1 (R)4GABA2.30.4%0.5
LLPC3 (R)6ACh2.30.4%0.3
PS172 (L)1Glu20.3%0.0
PS174 (R)1Glu20.3%0.0
VST2 (R)2ACh20.3%0.0
PS061 (R)1ACh1.70.3%0.0
LPT28 (R)1ACh1.70.3%0.0
DNpe015 (R)1ACh1.70.3%0.0
PS171 (L)1ACh1.70.3%0.0
DNge108 (R)1ACh1.30.2%0.0
IB058 (R)1Glu1.30.2%0.0
dCal1 (R)1GABA10.2%0.0
PS174 (L)1Glu10.2%0.0
PS331 (R)1GABA10.2%0.0
LPT115 (R)2GABA10.2%0.3
T5c (R)2ACh10.2%0.3
DNp39 (R)1ACh10.2%0.0
LPT27 (R)1ACh10.2%0.0
OCC02a (R)1unc10.2%0.0
GNG520 (R)1Glu10.2%0.0
DNp22 (R)1ACh10.2%0.0
T4a (R)3ACh10.2%0.0
PS078 (R)3GABA10.2%0.0
TmY14 (R)3unc10.2%0.0
T5a (R)3ACh10.2%0.0
TmY4 (R)3ACh10.2%0.0
VS (R)2ACh10.2%0.3
LPC2 (R)1ACh0.70.1%0.0
PS099_b (R)1Glu0.70.1%0.0
PS196_b (L)1ACh0.70.1%0.0
DNge107 (R)1GABA0.70.1%0.0
T5b (R)2ACh0.70.1%0.0
LPi43 (R)2Glu0.70.1%0.0
LPT111 (R)2GABA0.70.1%0.0
T4c (R)2ACh0.70.1%0.0
LLPC2 (R)2ACh0.70.1%0.0
T4b (R)1ACh0.30.1%0.0
PS351 (L)1ACh0.30.1%0.0
LPi2e (R)1Glu0.30.1%0.0
LPC1 (R)1ACh0.30.1%0.0
Tlp14 (R)1Glu0.30.1%0.0
LLPC1 (R)1ACh0.30.1%0.0
CB1792 (L)1GABA0.30.1%0.0
PS221 (R)1ACh0.30.1%0.0
PS055 (R)1GABA0.30.1%0.0
PS309 (R)1ACh0.30.1%0.0
5-HTPMPV03 (L)15-HT0.30.1%0.0
AOTU023 (L)1ACh0.30.1%0.0
Am1 (R)1GABA0.30.1%0.0
OA-AL2i1 (R)1unc0.30.1%0.0
LPi21 (R)1GABA0.30.1%0.0
TmY20 (R)1ACh0.30.1%0.0
Y11 (R)1Glu0.30.1%0.0
DNg36_b (R)1ACh0.30.1%0.0
PS279 (R)1Glu0.30.1%0.0
PS156 (R)1GABA0.30.1%0.0
LPT50 (L)1GABA0.30.1%0.0
CB1856 (R)1ACh0.30.1%0.0
CB0657 (R)1ACh0.30.1%0.0
LPi3c (R)1Glu0.30.1%0.0
Tlp13 (R)1Glu0.30.1%0.0
OLVC3 (L)1ACh0.30.1%0.0
AN06B009 (R)1GABA0.30.1%0.0
DNpe013 (R)1ACh0.30.1%0.0