Male CNS – Cell Type Explorer

VCH(L)

2
Total Neurons
Right: 1 | Left: 1
log ratio : 0.00
34,085
Total Synapses
Post: 29,789 | Pre: 4,296
log ratio : -2.79
34,085
Mean Synapses
Post: 29,789 | Pre: 4,296
log ratio : -2.79
GABA(87.5% CL)
Neurotransmitter

Population spatial coverage

Neuron Visualization

Dark Light

Navigation

🖱️ Left Mouse Button (LMB) + Drag
Rotate the view.
Shift + 🖱️ LMB + Drag
Translate the view.
Ctrl + Mousewheel
Zoom in and out.
⌨️ z
Reset view to closest
⌨️ o
Toggle between orthographic and perspective projection.
⌨️ l
Reassign random colors to neurons and ROI meshes.

Filtering

screenshot of neuroglancer filter section
1
Use text to filter neurons by type name.

2
Use tags to require or exclude neurons of certain properties, e.g. `soma_side`.

3
Add / remove matched neurons from view.

4
Remove currently selected neurons from view.

5
Toggle individual neurons from view.
?

ROI Innervation (8 ROIs)

ROI Name
In
%
In
log
ratio

Out
%
Out
LOP(R)26,93690.4%-2.684,19097.5%
IPS(R)2,5118.4%-7.05190.4%
WED(R)1640.6%-4.7760.1%
Optic-unspecified(R)990.3%-0.56671.6%
CentralBrain-unspecified420.1%-4.3920.0%
SPS(R)280.1%-3.2230.1%
LO(R)80.0%-0.4260.1%
VES(R)10.0%1.5830.1%

Connectivity

Inputs

upstream
partner
#NTconns
VCH
%
In
CV
T5a (R)536ACh9,87633.6%0.5
T4a (R)546ACh8,90830.3%0.5
TmY5a (R)416Glu2,1347.3%0.5
LPi21 (R)1GABA1,7475.9%0.0
Am1 (R)1GABA5551.9%0.0
LPi3412 (R)44Glu4481.5%0.7
V1 (L)1ACh4011.4%0.0
PS048_b (R)1ACh3671.2%0.0
H2 (L)1ACh3441.2%0.0
Tlp12 (R)45Glu3361.1%0.7
Y12 (R)65Glu3221.1%0.6
LPT31 (R)4ACh3011.0%0.1
TmY3 (R)145ACh2750.9%0.6
Nod5 (L)1ACh2400.8%0.0
PS321 (L)1GABA2180.7%0.0
LT82b (R)1ACh1780.6%0.0
Y14 (R)66Glu1730.6%0.6
OLVC3 (L)1ACh1590.5%0.0
Y13 (R)56Glu1530.5%0.6
Y3 (R)56ACh870.3%0.5
PS234 (R)1ACh840.3%0.0
Y11 (R)39Glu780.3%0.6
Tlp11 (R)23Glu720.2%0.8
GNG442 (L)3ACh670.2%0.3
TmY9b (R)41ACh650.2%0.7
CB0675 (R)1ACh630.2%0.0
PS338 (L)1Glu570.2%0.0
PS261 (R)2ACh550.2%0.4
PS339 (L)1Glu530.2%0.0
Nod5 (R)1ACh500.2%0.0
PS292 (R)2ACh490.2%0.4
LPi4a (R)13Glu490.2%0.6
LPT26 (R)1ACh470.2%0.0
LLPC1 (R)33ACh470.2%0.7
PS124 (L)1ACh460.2%0.0
TmY4 (R)25ACh420.1%0.6
PS047_b (R)1ACh410.1%0.0
TmY9a (R)26ACh410.1%0.5
MeVPOL1 (L)1ACh390.1%0.0
LPi2d (R)16Glu380.1%0.6
TmY20 (R)30ACh380.1%0.4
Tlp13 (R)22Glu370.1%0.6
AN10B021 (L)1ACh360.1%0.0
TmY18 (R)33ACh360.1%0.3
T4b (R)27ACh330.1%0.5
GNG624 (L)2ACh310.1%0.1
Tm2 (R)21ACh300.1%0.4
LPC1 (R)18ACh270.1%0.6
OA-AL2i1 (R)1unc250.1%0.0
CB1834 (L)2ACh240.1%0.1
GNG306 (R)1GABA220.1%0.0
PS072 (R)4GABA220.1%0.7
T5b (R)18ACh200.1%0.3
PS124 (R)1ACh190.1%0.0
PS048_a (R)1ACh190.1%0.0
LoVC22 (L)2DA190.1%0.2
ExR8 (R)2ACh180.1%0.1
TmY15 (R)14GABA180.1%0.5
PS059 (R)2GABA170.1%0.4
PS337 (L)1Glu160.1%0.0
DNg41 (L)1Glu160.1%0.0
Tm1 (R)6ACh150.1%0.4
PS344 (L)1Glu140.0%0.0
GNG580 (R)1ACh130.0%0.0
LPT54 (R)1ACh130.0%0.0
OA-AL2i4 (R)1OA130.0%0.0
5-HTPMPV03 (R)15-HT130.0%0.0
GNG382 (L)2Glu130.0%0.8
LPT23 (R)3ACh130.0%0.6
TmY13 (R)11ACh130.0%0.3
TmY14 (R)7unc120.0%1.0
LPT101 (R)3ACh120.0%0.4
LPi2e (R)7Glu120.0%0.6
PS137 (R)2Glu110.0%0.1
LAL111 (R)1GABA100.0%0.0
LPi2c (R)2Glu100.0%0.8
Li21 (R)2ACh100.0%0.2
TmY16 (R)8Glu100.0%0.5
MeVC25 (R)1Glu90.0%0.0
TmY17 (R)4ACh90.0%0.6
T2 (R)8ACh90.0%0.3
WED151 (R)1ACh80.0%0.0
PS099_b (L)1Glu80.0%0.0
LPT21 (R)1ACh80.0%0.0
H1 (L)1Glu80.0%0.0
T4d (R)5ACh80.0%0.8
AN07B037_b (L)1ACh70.0%0.0
PS060 (R)1GABA70.0%0.0
MeVC26 (L)1ACh70.0%0.0
LPi2b (R)1GABA60.0%0.0
5-HTPMPV03 (L)15-HT60.0%0.0
TmY21 (R)5ACh60.0%0.3
LPLC2 (R)5ACh60.0%0.3
PS304 (R)1GABA50.0%0.0
CB2497 (R)1ACh50.0%0.0
GNG615 (L)1ACh50.0%0.0
GNG625 (L)1ACh50.0%0.0
LPT22 (R)1GABA50.0%0.0
OLVC2 (L)1GABA50.0%0.0
H2 (R)1ACh50.0%0.0
PS239 (R)2ACh50.0%0.6
PS054 (R)2GABA50.0%0.6
DNb03 (R)2ACh50.0%0.6
PS291 (R)2ACh50.0%0.2
SAD005 (R)3ACh50.0%0.3
LT33 (L)1GABA40.0%0.0
PS047_a (R)1ACh40.0%0.0
PS335 (L)1ACh40.0%0.0
GNG411 (L)1Glu40.0%0.0
DNg33 (L)1ACh40.0%0.0
DNge006 (R)1ACh40.0%0.0
DNa16 (R)1ACh40.0%0.0
DCH (L)1GABA40.0%0.0
OA-VUMa4 (M)2OA40.0%0.5
LoVC18 (R)2DA40.0%0.5
LPLC1 (R)3ACh40.0%0.4
TmY19a (R)3GABA40.0%0.4
T4c (R)4ACh40.0%0.0
PS070 (R)1GABA30.0%0.0
GNG616 (L)1ACh30.0%0.0
PS077 (R)1GABA30.0%0.0
AN07B035 (L)1ACh30.0%0.0
PLP177 (R)1ACh30.0%0.0
PLP256 (R)1Glu30.0%0.0
AN19B017 (L)1ACh30.0%0.0
HSE (R)1ACh30.0%0.0
TmY10 (R)3ACh30.0%0.0
AN07B037_a (L)1ACh20.0%0.0
WED002 (R)1ACh20.0%0.0
CB1282 (R)1ACh20.0%0.0
CB0657 (R)1ACh20.0%0.0
Tm16 (R)1ACh20.0%0.0
SAD013 (L)1GABA20.0%0.0
DNg09_a (L)1ACh20.0%0.0
CB0086 (R)1GABA20.0%0.0
WED121 (R)1GABA20.0%0.0
PS061 (L)1ACh20.0%0.0
DNb02 (L)1Glu20.0%0.0
HST (R)1ACh20.0%0.0
Nod3 (R)1ACh20.0%0.0
LPT60 (R)1ACh20.0%0.0
LPi4b (R)1GABA20.0%0.0
LPi12 (R)1GABA20.0%0.0
HSN (R)1ACh20.0%0.0
OA-VUMa1 (M)1OA20.0%0.0
Tm3 (R)2ACh20.0%0.0
LLPC3 (R)2ACh20.0%0.0
LAL304m (R)2ACh20.0%0.0
Nod1 (R)2ACh20.0%0.0
AN27X008 (L)1HA10.0%0.0
GNG556 (L)1GABA10.0%0.0
DNp27 (L)1ACh10.0%0.0
VES085_b (R)1GABA10.0%0.0
DNge148 (L)1ACh10.0%0.0
AN09A005 (R)1unc10.0%0.0
PS328 (R)1GABA10.0%0.0
CB3740 (R)1GABA10.0%0.0
Tm12 (R)1ACh10.0%0.0
Tm4 (R)1ACh10.0%0.0
PS074 (R)1GABA10.0%0.0
WED023 (R)1GABA10.0%0.0
LPC2 (R)1ACh10.0%0.0
Tm5Y (R)1ACh10.0%0.0
PS316 (R)1GABA10.0%0.0
LLPC2 (R)1ACh10.0%0.0
Tlp14 (R)1Glu10.0%0.0
LPT28 (R)1ACh10.0%0.0
LoVC24 (R)1GABA10.0%0.0
WED038 (R)1Glu10.0%0.0
DNge115 (L)1ACh10.0%0.0
PS055 (R)1GABA10.0%0.0
LPLC4 (R)1ACh10.0%0.0
LAL128 (R)1DA10.0%0.0
CB1421 (R)1GABA10.0%0.0
LPT114 (R)1GABA10.0%0.0
LPT30 (R)1ACh10.0%0.0
DNge148 (R)1ACh10.0%0.0
PS196_b (R)1ACh10.0%0.0
MeVPLo1 (R)1Glu10.0%0.0
ATL042 (R)1unc10.0%0.0
MeVPLo1 (L)1Glu10.0%0.0
AN04B003 (R)1ACh10.0%0.0
OLVC5 (R)1ACh10.0%0.0
Nod2 (R)1GABA10.0%0.0
MeVPMe2 (R)1Glu10.0%0.0
MeVPMe1 (L)1Glu10.0%0.0
OA-AL2i3 (R)1OA10.0%0.0
GNG002 (L)1unc10.0%0.0
LPT57 (L)1ACh10.0%0.0
OA-AL2i2 (R)1OA10.0%0.0
GNG702m (R)1unc10.0%0.0
MeVC11 (R)1ACh10.0%0.0
DNge103 (R)1GABA10.0%0.0
HSS (R)1ACh10.0%0.0

Outputs

downstream
partner
#NTconns
VCH
%
Out
CV
T4a (R)526ACh3,25516.9%0.5
TmY14 (R)177unc2,95515.3%0.5
T5a (R)508ACh2,70014.0%0.5
TmY5a (R)379Glu1,1786.1%0.5
Y3 (R)202ACh8684.5%0.6
Am1 (R)1GABA7323.8%0.0
LLPC1 (R)90ACh7003.6%0.7
Tlp13 (R)36Glu6623.4%0.6
TmY18 (R)297ACh5893.1%0.5
TmY3 (R)228ACh5502.9%0.6
TmY15 (R)67GABA5202.7%0.7
Tlp12 (R)47Glu5072.6%0.5
TmY20 (R)99ACh4442.3%0.5
TmY4 (R)141ACh3832.0%0.7
T4c (R)189ACh3511.8%0.6
LPi2d (R)23Glu2861.5%0.7
T4d (R)183ACh2791.4%0.5
LPLC4 (R)27ACh2031.1%0.7
LPLC1 (R)35ACh1490.8%0.7
Nod5 (R)1ACh1270.7%0.0
LPT22 (R)1GABA1210.6%0.0
T4b (R)90ACh1150.6%0.4
T2 (R)89ACh1100.6%0.4
LLPC2 (R)44ACh910.5%0.7
T5c (R)72ACh910.5%0.5
T5d (R)62ACh790.4%0.5
Tm2 (R)49ACh780.4%0.6
Tlp11 (R)20Glu750.4%0.7
TmY9b (R)52ACh670.3%0.5
LLPC3 (R)32ACh640.3%0.8
TmY9a (R)49ACh620.3%0.4
Y14 (R)31Glu530.3%0.6
Y12 (R)32Glu490.3%0.5
Nod3 (R)1ACh440.2%0.0
TmY19a (R)19GABA420.2%0.8
LPi12 (R)2GABA410.2%0.2
LPi34 (R)15Glu400.2%0.9
LPi14 (R)13Glu400.2%0.5
Tm12 (R)23ACh350.2%0.4
LPLC2 (R)22ACh330.2%0.5
LPi21 (R)1GABA300.2%0.0
Tm5Y (R)19ACh270.1%0.7
Tm16 (R)13ACh270.1%0.5
Tm3 (R)21ACh270.1%0.4
Y11 (R)19Glu240.1%0.4
LPi2b (R)1GABA220.1%0.0
LPC1 (R)17ACh200.1%0.4
Y13 (R)18Glu200.1%0.3
LPi4b (R)1GABA190.1%0.0
TmY13 (R)15ACh170.1%0.3
LPi2c (R)11Glu140.1%0.3
Li29 (R)2GABA130.1%0.1
T5b (R)11ACh120.1%0.3
LPi4a (R)8Glu110.1%0.5
HSE (R)1ACh90.0%0.0
DCH (L)1GABA80.0%0.0
Tm1 (R)8ACh80.0%0.0
LPT31 (R)4ACh70.0%0.2
HST (R)1ACh60.0%0.0
OLVC3 (L)1ACh60.0%0.0
TmY17 (R)6ACh60.0%0.0
LPT26 (R)1ACh50.0%0.0
HSS (R)1ACh50.0%0.0
HSN (R)1ACh50.0%0.0
LPi3412 (R)5Glu50.0%0.0
LPi2e (R)1Glu40.0%0.0
Nod5 (L)1ACh40.0%0.0
OA-AL2i1 (R)1unc40.0%0.0
Tm4 (R)4ACh40.0%0.0
LPT112 (R)4GABA40.0%0.0
PS047_b (R)1ACh30.0%0.0
Tm24 (R)1ACh30.0%0.0
VST1 (R)1ACh30.0%0.0
DNb03 (R)1ACh30.0%0.0
LPT49 (R)1ACh30.0%0.0
H1 (L)1Glu30.0%0.0
H1 (R)1Glu30.0%0.0
LPT54 (R)1ACh30.0%0.0
LT36 (L)1GABA30.0%0.0
DNp27 (R)1ACh30.0%0.0
5-HTPMPV03 (R)15-HT30.0%0.0
Tm5b (R)2ACh30.0%0.3
LPT23 (R)2ACh30.0%0.3
T3 (R)3ACh30.0%0.0
MeLo11 (R)3Glu30.0%0.0
PS234 (R)1ACh20.0%0.0
WED081 (L)1GABA20.0%0.0
CB3746 (R)1GABA20.0%0.0
LT82b (R)1ACh20.0%0.0
vCal3 (R)1ACh20.0%0.0
Nod1 (R)1ACh20.0%0.0
V1 (L)1ACh20.0%0.0
WED143_c (R)2ACh20.0%0.0
Tm6 (R)2ACh20.0%0.0
Li21 (R)2ACh20.0%0.0
TmY21 (R)2ACh20.0%0.0
LOLP1 (R)2GABA20.0%0.0
Li26 (R)2GABA20.0%0.0
TmY16 (R)2Glu20.0%0.0
LoVC22 (L)2DA20.0%0.0
CB0390 (R)1GABA10.0%0.0
PS048_b (R)1ACh10.0%0.0
AN09A005 (L)1unc10.0%0.0
PS047_a (R)1ACh10.0%0.0
LAL040 (L)1GABA10.0%0.0
ExR8 (R)1ACh10.0%0.0
VES056 (R)1ACh10.0%0.0
LPT110 (R)1ACh10.0%0.0
Tm9 (R)1ACh10.0%0.0
T2a (R)1ACh10.0%0.0
Tm20 (R)1ACh10.0%0.0
PS072 (R)1GABA10.0%0.0
LPT101 (R)1ACh10.0%0.0
LPC2 (R)1ACh10.0%0.0
PS077 (R)1GABA10.0%0.0
GNG624 (L)1ACh10.0%0.0
WED143_b (R)1ACh10.0%0.0
PS078 (L)1GABA10.0%0.0
PLP257 (R)1GABA10.0%0.0
PLP230 (L)1ACh10.0%0.0
SAD005 (R)1ACh10.0%0.0
LPT116 (R)1GABA10.0%0.0
LAL128 (R)1DA10.0%0.0
PS085 (R)1Glu10.0%0.0
CB0141 (R)1ACh10.0%0.0
LPT114 (R)1GABA10.0%0.0
LPT51 (R)1Glu10.0%0.0
LLPC4 (R)1ACh10.0%0.0
GNG580 (R)1ACh10.0%0.0
LPT30 (R)1ACh10.0%0.0
PS321 (R)1GABA10.0%0.0
MeVPLp2 (L)1Glu10.0%0.0
DNae007 (R)1ACh10.0%0.0
vCal1 (R)1Glu10.0%0.0
Nod4 (R)1ACh10.0%0.0
LPT60 (R)1ACh10.0%0.0
PS196_a (R)1ACh10.0%0.0
MeVCMe1 (R)1ACh10.0%0.0
5-HTPMPV03 (L)15-HT10.0%0.0
MeVPLp1 (L)1ACh10.0%0.0
CT1 (L)1GABA10.0%0.0