Male CNS – Cell Type Explorer

SNxx11(R)

11
Total Neurons
Right: 5 | Left: 6
log ratio : 0.26
6,327
Total Synapses
Post: 3,230 | Pre: 3,097
log ratio : -0.06
1,265.4
Mean Synapses
Post: 646 | Pre: 619.4
log ratio : -0.06
ACh(97.0% CL)
Neurotransmitter

Neuron Visualization

Dark Light

Navigation

🖱️ Left Mouse Button (LMB) + Drag
Rotate the view.
Shift + 🖱️ LMB + Drag
Translate the view.
Ctrl + Mousewheel
Zoom in and out.
⌨️ z
Reset view to closest
⌨️ o
Toggle between orthographic and perspective projection.
⌨️ l
Reassign random colors to neurons and ROI meshes.

Filtering

screenshot of neuroglancer filter section
1
Use text to filter neurons by type name.

2
Use tags to require or exclude neurons of certain properties, e.g. `soma_side`.

3
Add / remove matched neurons from view.

4
Remove currently selected neurons from view.

5
Toggle individual neurons from view.
?

ROI Innervation (4 ROIs)

ROI Name
In
%
In
log
ratio

Out
%
Out
ANm3,15797.7%-0.142,86792.6%
AbNT(R)621.9%1.882287.4%
AbN4(R)60.2%-1.5820.1%
VNC-unspecified50.2%-inf00.0%

Connectivity

Inputs

upstream
partner
#NTconns
SNxx11
%
In
CV
INXXX124 (R)1GABA6614.9%0.0
SNxx115ACh6214.0%0.3
INXXX395 (L)2GABA51.411.6%0.0
SNxx0212ACh368.1%0.8
INXXX406 (L)2GABA25.25.7%0.0
INXXX124 (L)1GABA22.45.1%0.0
AN01B002 (R)2GABA21.44.8%0.8
SNxx238ACh214.7%1.0
INXXX225 (R)1GABA18.24.1%0.0
INXXX405 (R)1ACh132.9%0.0
AN01B002 (L)1GABA132.9%0.0
INXXX258 (L)2GABA8.61.9%0.6
IN00A024 (M)2GABA7.81.8%0.9
IN05B019 (R)1GABA7.81.8%0.0
IN05B013 (L)1GABA6.61.5%0.0
IN05B033 (L)1GABA5.81.3%0.0
INXXX217 (L)2GABA4.61.0%0.7
INXXX253 (L)2GABA4.41.0%0.5
IN05B033 (R)2GABA40.9%0.0
IN19B068 (L)1ACh3.60.8%0.0
SNxx104ACh30.7%0.5
INXXX281 (R)2ACh2.40.5%0.8
IN05B013 (R)1GABA1.80.4%0.0
INXXX258 (R)1GABA1.80.4%0.0
IN05B055 (L)1GABA1.60.4%0.0
IN01A048 (L)2ACh1.40.3%0.1
INXXX045 (L)1unc1.20.3%0.0
INXXX231 (R)1ACh1.20.3%0.0
INXXX253 (R)1GABA1.20.3%0.0
INXXX290 (L)4unc1.20.3%0.3
INXXX428 (L)1GABA1.20.3%0.0
IN00A033 (M)1GABA10.2%0.0
INXXX396 (L)3GABA10.2%0.6
INXXX394 (R)2GABA10.2%0.2
IN01A051 (L)2ACh10.2%0.6
MNad64 (L)1GABA0.80.2%0.0
SNxx041ACh0.80.2%0.0
INXXX334 (L)1GABA0.80.2%0.0
INXXX217 (R)2GABA0.80.2%0.0
IN09A015 (L)1GABA0.80.2%0.0
INXXX058 (R)2GABA0.80.2%0.5
INXXX395 (R)1GABA0.60.1%0.0
IN01A061 (L)1ACh0.60.1%0.0
INXXX346 (L)1GABA0.60.1%0.0
SNch012ACh0.60.1%0.3
INXXX334 (R)1GABA0.60.1%0.0
SNxx032ACh0.60.1%0.3
INXXX411 (R)2GABA0.60.1%0.3
INXXX411 (L)1GABA0.60.1%0.0
INXXX436 (R)1GABA0.40.1%0.0
INXXX429 (L)1GABA0.40.1%0.0
INXXX401 (R)1GABA0.40.1%0.0
INXXX474 (R)1GABA0.40.1%0.0
INXXX450 (L)2GABA0.40.1%0.0
IN01A051 (R)1ACh0.40.1%0.0
DNg34 (R)1unc0.40.1%0.0
SNxx201ACh0.40.1%0.0
INXXX087 (R)1ACh0.40.1%0.0
INXXX317 (R)1Glu0.20.0%0.0
IN02A059 (R)1Glu0.20.0%0.0
INXXX161 (R)1GABA0.20.0%0.0
INXXX416 (R)1unc0.20.0%0.0
INXXX111 (R)1ACh0.20.0%0.0
INXXX417 (R)1GABA0.20.0%0.0
SNxx081ACh0.20.0%0.0
INXXX369 (L)1GABA0.20.0%0.0
IN07B061 (R)1Glu0.20.0%0.0
INXXX339 (L)1ACh0.20.0%0.0
INXXX215 (R)1ACh0.20.0%0.0
INXXX045 (R)1unc0.20.0%0.0
INXXX260 (R)1ACh0.20.0%0.0
AN05B068 (L)1GABA0.20.0%0.0
INXXX096 (R)1ACh0.20.0%0.0
IN08B062 (L)1ACh0.20.0%0.0
IN14A020 (L)1Glu0.20.0%0.0
INXXX126 (R)1ACh0.20.0%0.0
IN12B002 (L)1GABA0.20.0%0.0
INXXX268 (R)1GABA0.20.0%0.0
INXXX357 (R)1ACh0.20.0%0.0
INXXX297 (R)1ACh0.20.0%0.0
INXXX100 (R)1ACh0.20.0%0.0
ANXXX116 (R)1ACh0.20.0%0.0

Outputs

downstream
partner
#NTconns
SNxx11
%
Out
CV
INXXX058 (R)3GABA91.68.3%0.4
INXXX126 (R)4ACh71.46.5%0.7
SNxx115ACh625.6%0.2
IN01A048 (L)2ACh51.64.7%0.5
INXXX281 (R)3ACh47.24.3%0.3
INXXX124 (R)1GABA393.5%0.0
INXXX411 (R)2GABA36.83.3%0.2
IN01A051 (L)2ACh30.82.8%0.1
INXXX215 (R)2ACh302.7%0.2
INXXX395 (R)2GABA262.4%0.2
IN07B061 (R)4Glu252.3%0.8
INXXX334 (R)2GABA21.82.0%0.0
INXXX396 (L)5GABA20.41.9%0.6
INXXX027 (L)2ACh19.61.8%0.9
IN01A065 (L)2ACh19.61.8%1.0
SNxx0212ACh19.21.7%0.7
INXXX260 (R)2ACh191.7%0.3
INXXX096 (R)2ACh17.41.6%0.1
INXXX087 (R)1ACh171.5%0.0
INXXX032 (R)3ACh16.61.5%0.7
INXXX032 (L)3ACh14.61.3%0.5
SNxx237ACh13.21.2%1.2
INXXX124 (L)1GABA131.2%0.0
IN01A061 (L)3ACh12.81.2%0.2
INXXX396 (R)5GABA12.61.1%0.4
INXXX395 (L)2GABA121.1%0.1
INXXX246 (L)2ACh11.41.0%0.1
INXXX411 (L)2GABA11.21.0%0.3
INXXX225 (R)1GABA10.20.9%0.0
INXXX306 (R)2GABA9.60.9%0.6
INXXX297 (R)2ACh9.60.9%0.3
INXXX339 (L)1ACh9.20.8%0.0
INXXX406 (R)2GABA9.20.8%0.7
INXXX246 (R)2ACh9.20.8%0.1
INXXX161 (R)2GABA90.8%0.3
AN01B002 (R)3GABA90.8%0.8
INXXX281 (L)1ACh8.80.8%0.0
INXXX217 (R)4GABA8.80.8%0.3
IN01A051 (R)1ACh80.7%0.0
INXXX416 (R)3unc7.60.7%0.5
INXXX282 (L)1GABA70.6%0.0
INXXX058 (L)2GABA6.80.6%0.8
INXXX217 (L)4GABA6.80.6%0.7
INXXX438 (R)2GABA60.5%0.2
INXXX253 (R)2GABA5.80.5%0.0
INXXX357 (R)1ACh5.40.5%0.0
INXXX215 (L)2ACh5.40.5%0.4
INXXX317 (R)1Glu5.20.5%0.0
INXXX369 (R)2GABA5.20.5%0.2
INXXX230 (R)5GABA5.20.5%0.5
ANXXX027 (L)2ACh50.5%0.3
INXXX027 (R)1ACh50.5%0.0
INXXX301 (L)2ACh50.5%0.1
IN06A106 (R)4GABA4.80.4%0.4
IN08B062 (L)3ACh4.60.4%0.7
IN00A024 (M)3GABA4.40.4%0.7
INXXX253 (L)2GABA4.40.4%0.0
INXXX306 (L)2GABA4.20.4%0.1
AN01B002 (L)1GABA40.4%0.0
INXXX428 (R)2GABA40.4%0.4
INXXX446 (R)3ACh3.80.3%0.5
INXXX406 (L)2GABA3.80.3%0.1
INXXX100 (R)3ACh3.80.3%0.6
INXXX122 (R)2ACh3.40.3%0.1
INXXX450 (L)2GABA3.40.3%0.3
INXXX315 (R)3ACh3.40.3%0.7
IN19B068 (R)2ACh3.40.3%0.5
INXXX228 (R)2ACh3.40.3%0.3
INXXX346 (R)2GABA2.80.3%0.3
INXXX257 (R)1GABA2.80.3%0.0
INXXX052 (L)1ACh2.80.3%0.0
INXXX260 (L)2ACh2.60.2%0.4
MNad15 (R)2unc2.20.2%0.3
INXXX428 (L)1GABA2.20.2%0.0
SNxx104ACh2.20.2%0.7
ANXXX116 (R)1ACh20.2%0.0
INXXX405 (R)1ACh20.2%0.0
INXXX307 (R)2ACh1.80.2%0.1
INXXX025 (R)1ACh1.80.2%0.0
INXXX243 (R)2GABA1.60.1%0.8
IN01A048 (R)2ACh1.60.1%0.8
INXXX334 (L)2GABA1.40.1%0.4
INXXX417 (R)3GABA1.40.1%0.5
INXXX431 (R)2ACh1.40.1%0.1
INXXX052 (R)1ACh1.40.1%0.0
INXXX429 (R)4GABA1.40.1%0.2
IN00A033 (M)3GABA1.40.1%0.8
INXXX424 (R)1GABA1.20.1%0.0
INXXX045 (R)1unc1.20.1%0.0
INXXX333 (R)1GABA1.20.1%0.0
AN19A018 (R)1ACh1.20.1%0.0
INXXX299 (R)1ACh1.20.1%0.0
INXXX231 (R)2ACh1.20.1%0.0
INXXX346 (L)2GABA1.20.1%0.3
ANXXX116 (L)1ACh10.1%0.0
IN10B001 (L)1ACh10.1%0.0
DNg34 (R)1unc10.1%0.0
IN01A043 (R)2ACh10.1%0.2
INXXX287 (R)2GABA0.80.1%0.5
INXXX045 (L)1unc0.80.1%0.0
IN14A020 (L)2Glu0.80.1%0.5
IN05B019 (R)1GABA0.80.1%0.0
INXXX258 (L)1GABA0.80.1%0.0
INXXX394 (R)2GABA0.80.1%0.0
INXXX416 (L)3unc0.80.1%0.4
INXXX424 (L)2GABA0.80.1%0.0
INXXX401 (R)1GABA0.60.1%0.0
INXXX301 (R)1ACh0.60.1%0.0
INXXX293 (R)2unc0.60.1%0.3
INXXX425 (R)1ACh0.60.1%0.0
INXXX290 (L)2unc0.60.1%0.3
INXXX331 (R)2ACh0.60.1%0.3
INXXX240 (R)1ACh0.60.1%0.0
INXXX370 (R)2ACh0.60.1%0.3
INXXX316 (R)2GABA0.60.1%0.3
INXXX307 (L)1ACh0.60.1%0.0
INXXX360 (R)1GABA0.40.0%0.0
INXXX212 (R)1ACh0.40.0%0.0
INXXX258 (R)1GABA0.40.0%0.0
AN05B036 (R)1GABA0.40.0%0.0
INXXX331 (L)1ACh0.40.0%0.0
IN00A027 (M)1GABA0.40.0%0.0
ANXXX055 (R)1ACh0.40.0%0.0
AN17A018 (R)1ACh0.40.0%0.0
INXXX397 (R)1GABA0.40.0%0.0
INXXX303 (R)1GABA0.40.0%0.0
DNd04 (L)1Glu0.40.0%0.0
INXXX290 (R)1unc0.40.0%0.0
INXXX100 (L)1ACh0.40.0%0.0
IN14A029 (L)1unc0.40.0%0.0
INXXX268 (R)1GABA0.40.0%0.0
INXXX454 (R)2ACh0.40.0%0.0
INXXX326 (R)2unc0.40.0%0.0
IN06A066 (R)1GABA0.20.0%0.0
IN06A109 (R)1GABA0.20.0%0.0
INXXX363 (R)1GABA0.20.0%0.0
IN05B033 (R)1GABA0.20.0%0.0
IN18B033 (R)1ACh0.20.0%0.0
ANXXX410 (R)1ACh0.20.0%0.0
INXXX443 (R)1GABA0.20.0%0.0
ANXXX027 (R)1ACh0.20.0%0.0
INXXX341 (R)1GABA0.20.0%0.0
IN05B055 (L)1GABA0.20.0%0.0
INXXX353 (R)1ACh0.20.0%0.0
IN02A044 (R)1Glu0.20.0%0.0
IN23B042 (L)1ACh0.20.0%0.0
INXXX427 (R)1ACh0.20.0%0.0
INXXX414 (R)1ACh0.20.0%0.0
INXXX322 (R)1ACh0.20.0%0.0
IN05B013 (L)1GABA0.20.0%0.0
IN05B013 (R)1GABA0.20.0%0.0
IN09A007 (L)1GABA0.20.0%0.0
AN05B068 (L)1GABA0.20.0%0.0
AN19A018 (L)1ACh0.20.0%0.0
AN00A006 (M)1GABA0.20.0%0.0
INXXX429 (L)1GABA0.20.0%0.0
AN05B108 (L)1GABA0.20.0%0.0
SNch011ACh0.20.0%0.0
INXXX247 (R)1ACh0.20.0%0.0
ANXXX084 (R)1ACh0.20.0%0.0
SNxx041ACh0.20.0%0.0
INXXX436 (R)1GABA0.20.0%0.0
IN01A059 (L)1ACh0.20.0%0.0
IN05B033 (L)1GABA0.20.0%0.0
INXXX111 (R)1ACh0.20.0%0.0
ANXXX055 (L)1ACh0.20.0%0.0