Male CNS – Cell Type Explorer

SNta04(R)

83
Total Neurons
Right: 40 | Left: 43
log ratio : 0.10
20,811
Total Synapses
Post: 12,075 | Pre: 8,736
log ratio : -0.47
520.3
Mean Synapses
Post: 301.9 | Pre: 218.4
log ratio : -0.47
ACh(96.7% CL)
Neurotransmitter

Neuron Visualization

Dark Light

Navigation

🖱️ Left Mouse Button (LMB) + Drag
Rotate the view.
Shift + 🖱️ LMB + Drag
Translate the view.
Ctrl + Mousewheel
Zoom in and out.
⌨️ z
Reset view to closest
⌨️ o
Toggle between orthographic and perspective projection.
⌨️ l
Reassign random colors to neurons and ROI meshes.

Filtering

screenshot of neuroglancer filter section
1
Use text to filter neurons by type name.

2
Use tags to require or exclude neurons of certain properties, e.g. `soma_side`.

3
Add / remove matched neurons from view.

4
Remove currently selected neurons from view.

5
Toggle individual neurons from view.
?

ROI Innervation (3 ROIs)

ROI Name
In
%
In
log
ratio

Out
%
Out
Ov(R)11,45694.9%-0.498,13993.2%
VNC-unspecified3863.2%-0.572603.0%
ADMN(R)2321.9%0.533363.8%

Connectivity

Inputs

upstream
partner
#NTconns
SNta04
%
In
CV
SNta0440ACh144.350.9%0.3
INXXX044 (R)4GABA38.213.5%1.0
IN01B001 (R)1GABA27.79.8%0.0
SNta04,SNta1129ACh16.55.8%0.8
IN17B006 (R)1GABA14.85.2%0.0
IN05B001 (R)1GABA6.42.3%0.0
AN05B029 (L)1GABA62.1%0.0
SNta1820ACh4.41.6%1.9
IN05B001 (L)1GABA3.21.1%0.0
AN08B007 (L)1GABA3.21.1%0.0
IN05B036 (L)1GABA2.60.9%0.0
AN05B040 (L)1GABA1.80.6%0.0
SNta11,SNta1410ACh1.60.6%2.0
SNta147ACh1.40.5%1.2
IN05B033 (L)2GABA0.80.3%0.8
IN06B024 (L)1GABA0.70.2%0.0
IN17B010 (R)1GABA0.70.2%0.0
AN05B009 (L)1GABA0.70.2%0.0
DNge104 (L)1GABA0.70.2%0.0
IN05B016 (L)1GABA0.60.2%0.0
IN05B016 (R)1GABA0.50.2%0.0
SNta118ACh0.50.2%0.8
IN23B005 (R)1ACh0.50.2%0.0
IN06B024 (R)1GABA0.50.2%0.0
DNge138 (M)1unc0.40.1%0.0
WG310unc0.30.1%0.3
IN05B019 (R)1GABA0.30.1%0.0
WG47ACh0.20.1%0.5
AN05B068 (L)1GABA0.20.1%0.0
WG26ACh0.20.1%0.3
IN06B077 (L)3GABA0.20.1%0.4
IN05B028 (R)1GABA0.10.1%0.0
AN09B023 (L)2ACh0.10.1%0.0
IN06B032 (L)1GABA0.10.1%0.0
WG15ACh0.10.1%0.3
ANXXX013 (R)1GABA0.10.0%0.0
IN05B010 (L)1GABA0.10.0%0.0
INXXX238 (L)1ACh0.10.0%0.0
SNpp302ACh0.10.0%0.0
AN08B012 (L)2ACh0.10.0%0.0
DNg104 (L)1unc0.10.0%0.0
AN08B012 (R)1ACh0.10.0%0.0
IN05B028 (L)1GABA0.10.0%0.0
AN23B002 (L)1ACh0.10.0%0.0
IN05B019 (L)1GABA0.10.0%0.0
SNpp29,SNpp632ACh0.10.0%0.3
IN00A009 (M)1GABA0.10.0%0.0
AN05B058 (L)1GABA0.10.0%0.0
IN19B033 (L)1ACh0.10.0%0.0
AN19B032 (L)1ACh0.10.0%0.0
AN09B030 (L)1Glu0.10.0%0.0
ANXXX027 (L)2ACh0.10.0%0.3
IN06B067 (L)2GABA0.10.0%0.3
DNd03 (R)1Glu0.10.0%0.0
IN17B004 (R)1GABA0.10.0%0.0
IN17A023 (R)1ACh0.10.0%0.0
ANXXX057 (L)1ACh0.10.0%0.0
ANXXX178 (L)1GABA0.10.0%0.0
AN09B036 (L)1ACh0.10.0%0.0
IN17A088, IN17A089 (R)1ACh0.10.0%0.0
IN06B078 (R)1GABA0.10.0%0.0
IN01A024 (L)1ACh0.10.0%0.0
AN08B010 (L)1ACh0.10.0%0.0
AN08B049 (R)1ACh0.00.0%0.0
AN06B089 (L)1GABA0.00.0%0.0
IN11A032_c (R)1ACh0.00.0%0.0
IN11A020 (R)1ACh0.00.0%0.0
ANXXX093 (L)1ACh0.00.0%0.0
IN06B078 (L)1GABA0.00.0%0.0
SApp101ACh0.00.0%0.0
IN08B017 (R)1ACh0.00.0%0.0
IN06B016 (L)1GABA0.00.0%0.0
INXXX027 (L)1ACh0.00.0%0.0
ANXXX005 (R)1unc0.00.0%0.0
IN05B002 (R)1GABA0.00.0%0.0
IN12A006 (R)1ACh0.00.0%0.0
DNd02 (R)1unc0.00.0%0.0
IN00A051 (M)1GABA0.00.0%0.0
AN04A001 (R)1ACh0.00.0%0.0
IN00A052 (M)1GABA0.00.0%0.0
IN17A090 (R)1ACh0.00.0%0.0
IN19A056 (R)1GABA0.00.0%0.0
IN12A007 (R)1ACh0.00.0%0.0
AN05B099 (L)1ACh0.00.0%0.0
AN09B030 (R)1Glu0.00.0%0.0
IN06B013 (L)1GABA0.00.0%0.0
IN10B023 (R)1ACh0.00.0%0.0

Outputs

downstream
partner
#NTconns
SNta04
%
Out
CV
SNta0440ACh144.318.2%0.3
INXXX044 (R)4GABA71.29.0%0.5
IN23B005 (R)2ACh60.47.6%1.0
IN19B033 (L)1ACh31.03.9%0.0
AN09B023 (L)2ACh29.83.8%0.3
AN23B002 (R)1ACh29.43.7%0.0
ANXXX027 (L)6ACh23.42.9%0.6
IN01B001 (R)1GABA22.22.8%0.0
AN17A003 (R)2ACh19.62.5%1.0
INXXX238 (L)1ACh19.62.5%0.0
SNta04,SNta1129ACh19.52.5%0.7
AN23B002 (L)1ACh17.12.1%0.0
AN08B007 (L)1GABA15.82.0%0.0
INXXX027 (L)2ACh15.62.0%1.0
AN19B032 (L)1ACh13.81.7%0.0
IN06B032 (L)1GABA12.41.6%0.0
AN05B009 (L)1GABA12.11.5%0.0
AN06B089 (L)1GABA10.91.4%0.0
IN06B077 (L)4GABA8.71.1%0.6
IN06B012 (R)1GABA8.21.0%0.0
IN11A022 (R)3ACh8.01.0%0.6
IN23B006 (R)2ACh7.71.0%0.2
IN17A023 (R)1ACh70.9%0.0
IN06B003 (R)1GABA6.90.9%0.0
AN09B009 (L)2ACh60.8%0.7
AN08B012 (L)2ACh6.00.8%0.1
IN05B010 (L)1GABA5.80.7%0.0
AN05B096 (R)1ACh5.20.6%0.0
IN17A088, IN17A089 (R)3ACh5.20.6%0.2
AN04A001 (R)1ACh4.80.6%0.0
IN06B024 (R)1GABA4.80.6%0.0
AN05B099 (L)3ACh4.80.6%0.2
AN05B058 (L)2GABA4.50.6%0.3
IN06B024 (L)1GABA4.50.6%0.0
AN09B030 (R)2Glu4.40.6%0.6
IN17B006 (R)1GABA4.30.5%0.0
SNta1824ACh4.30.5%1.3
ANXXX057 (L)1ACh4.10.5%0.0
IN17B004 (R)2GABA3.80.5%0.3
AN09B036 (L)1ACh3.80.5%0.0
IN11A013 (R)1ACh2.90.4%0.0
AN23B001 (R)1ACh2.80.3%0.0
AN09B021 (R)1Glu2.80.3%0.0
IN08B080 (R)1ACh2.60.3%0.0
IN01A017 (L)1ACh2.60.3%0.0
AN09B030 (L)2Glu2.50.3%0.7
AN05B029 (L)1GABA2.50.3%0.0
IN06B016 (L)1GABA2.40.3%0.0
IN12A005 (R)1ACh2.40.3%0.0
IN06B067 (R)2GABA2.20.3%0.2
IN06B012 (L)1GABA2.00.3%0.0
AN08B013 (R)1ACh1.90.2%0.0
IN17A064 (R)2ACh1.90.2%0.6
AN08B010 (L)1ACh1.90.2%0.0
IN17A020 (R)1ACh1.90.2%0.0
IN08B073 (R)1ACh1.80.2%0.0
IN05B036 (L)1GABA1.80.2%0.0
AN09B021 (L)1Glu1.80.2%0.0
IN06B063 (R)5GABA1.70.2%0.7
SNta147ACh1.60.2%1.1
AN05B099 (R)1ACh1.60.2%0.0
IN00A051 (M)2GABA1.60.2%0.8
IN10B023 (R)1ACh1.60.2%0.0
IN12A006 (R)1ACh1.60.2%0.0
AN07B024 (R)1ACh1.50.2%0.0
AN08B010 (R)1ACh1.50.2%0.0
IN05B028 (L)1GABA1.40.2%0.0
IN06B078 (R)3GABA1.40.2%1.2
IN06B013 (L)1GABA1.40.2%0.0
AN13B002 (L)1GABA1.30.2%0.0
SNta11,SNta149ACh1.30.2%1.6
IN08B017 (R)1ACh1.20.2%0.0
ANXXX178 (L)1GABA1.10.1%0.0
AN08B012 (R)1ACh1.10.1%0.0
AN06B031 (L)1GABA1.10.1%0.0
IN11A020 (R)2ACh1.10.1%0.1
AN05B040 (L)1GABA1.00.1%0.0
IN11A025 (R)2ACh0.90.1%0.9
ANXXX057 (R)1ACh0.80.1%0.0
ANXXX178 (R)1GABA0.80.1%0.0
SNta119ACh0.80.1%0.9
ANXXX013 (R)1GABA0.80.1%0.0
AN09B003 (L)1ACh0.70.1%0.0
IN05B001 (R)1GABA0.70.1%0.0
AN05B056 (L)1GABA0.70.1%0.0
IN05B033 (L)2GABA0.70.1%0.9
IN03B034 (R)1GABA0.70.1%0.0
AN08B005 (R)1ACh0.70.1%0.0
ANXXX170 (L)2ACh0.70.1%0.2
IN00A052 (M)1GABA0.70.1%0.0
IN08B085_a (R)2ACh0.70.1%0.9
IN03A032 (R)1ACh0.60.1%0.0
IN11A016 (R)2ACh0.60.1%0.8
DNge104 (L)1GABA0.60.1%0.0
DNge138 (M)2unc0.60.1%0.8
IN12A007 (R)1ACh0.60.1%0.0
IN09B038 (L)1ACh0.50.1%0.0
IN09B014 (L)1ACh0.50.1%0.0
IN17A093 (R)1ACh0.50.1%0.0
IN00A038 (M)4GABA0.50.1%0.4
IN00A048 (M)2GABA0.50.1%0.8
IN05B001 (L)1GABA0.50.1%0.0
AN09B035 (R)2Glu0.50.1%0.8
AN08B049 (R)1ACh0.50.1%0.0
IN17B015 (R)1GABA0.40.1%0.0
IN06B080 (R)3GABA0.40.1%0.3
WG410ACh0.40.1%0.6
WG28ACh0.40.1%0.8
ANXXX005 (R)1unc0.40.1%0.0
IN00A036 (M)2GABA0.40.1%0.1
ANXXX055 (L)1ACh0.40.1%0.0
IN00A009 (M)1GABA0.40.1%0.0
INXXX042 (L)1ACh0.40.1%0.0
AN05B102d (L)1ACh0.40.1%0.0
IN19B072 (L)1ACh0.30.0%0.0
IN00A025 (M)1GABA0.30.0%0.0
IN00A063 (M)2GABA0.30.0%0.4
WG38unc0.30.0%0.4
IN17A035 (R)1ACh0.30.0%0.0
AN05B068 (L)2GABA0.30.0%0.6
IN03B034 (L)1GABA0.30.0%0.0
IN11A032_a (R)1ACh0.30.0%0.0
IN17A080,IN17A083 (R)1ACh0.30.0%0.0
IN06B059 (R)2GABA0.30.0%0.8
IN01A024 (L)1ACh0.30.0%0.0
IN17A112 (R)1ACh0.30.0%0.0
AN09B035 (L)1Glu0.30.0%0.0
AN17B012 (R)1GABA0.30.0%0.0
AN09B029 (L)1ACh0.30.0%0.0
IN00A060 (M)1GABA0.30.0%0.0
AN17A004 (R)1ACh0.30.0%0.0
WG18ACh0.30.0%0.4
IN00A065 (M)1GABA0.20.0%0.0
IN19B062 (L)1ACh0.20.0%0.0
IN05B016 (L)1GABA0.20.0%0.0
IN17A029 (R)1ACh0.20.0%0.0
IN11A032_c (R)1ACh0.20.0%0.0
IN17A084 (R)1ACh0.20.0%0.0
IN05B028 (R)1GABA0.20.0%0.0
IN06B078 (L)2GABA0.20.0%0.6
IN00A045 (M)2GABA0.20.0%0.3
IN11A021 (R)1ACh0.20.0%0.0
DNd03 (R)1Glu0.20.0%0.0
IN08B045 (R)1ACh0.20.0%0.0
SNpp323ACh0.20.0%0.5
IN08B003 (R)1GABA0.20.0%0.0
AN17A024 (R)1ACh0.20.0%0.0
IN11A014 (R)2ACh0.20.0%0.8
AN09B060 (L)1ACh0.20.0%0.0
IN11A032_d (R)1ACh0.20.0%0.0
ANXXX093 (L)1ACh0.20.0%0.0
AN09B013 (L)1ACh0.20.0%0.0
IN07B012 (R)1ACh0.20.0%0.0
AN06B007 (L)1GABA0.20.0%0.0
AN05B107 (R)1ACh0.20.0%0.0
IN11A016 (L)1ACh0.10.0%0.0
IN03A044 (R)1ACh0.10.0%0.0
IN05B019 (R)1GABA0.10.0%0.0
AN08B023 (L)1ACh0.10.0%0.0
IN05B002 (R)1GABA0.10.0%0.0
IN14A023 (L)1Glu0.10.0%0.0
IN17B010 (R)1GABA0.10.0%0.0
IN06B067 (L)2GABA0.10.0%0.3
IN17A095 (R)1ACh0.10.0%0.0
AN17A031 (R)1ACh0.10.0%0.0
IN19B058 (L)1ACh0.10.0%0.0
AN05B097 (R)1ACh0.10.0%0.0
AN10B015 (L)1ACh0.10.0%0.0
IN00A031 (M)2GABA0.10.0%0.6
IN17A106_a (R)1ACh0.10.0%0.0
IN10B023 (L)1ACh0.10.0%0.0
IN11A013 (L)1ACh0.10.0%0.0
INXXX007 (L)1GABA0.10.0%0.0
IN16B063 (R)1Glu0.10.0%0.0
IN00A061 (M)1GABA0.10.0%0.0
DNg104 (L)1unc0.10.0%0.0
IN11A042 (R)1ACh0.10.0%0.0
IN05B055 (L)1GABA0.10.0%0.0
IN08B083_b (R)1ACh0.10.0%0.0
AN05B105 (R)1ACh0.10.0%0.0
AN09B024 (R)1ACh0.10.0%0.0
IN17A107 (R)1ACh0.10.0%0.0
AN10B015 (R)1ACh0.10.0%0.0
IN12A002 (R)1ACh0.10.0%0.0
IN13A022 (R)1GABA0.10.0%0.0
IN05B011a (R)1GABA0.10.0%0.0
AN09B012 (L)1ACh0.10.0%0.0
AN08B009 (R)1ACh0.10.0%0.0
IN05B033 (R)1GABA0.10.0%0.0
SNta131ACh0.10.0%0.0
IN00A003 (M)1GABA0.10.0%0.0
IN11A012 (R)1ACh0.10.0%0.0
DNde006 (R)1Glu0.10.0%0.0
AN05B054_b (L)1GABA0.10.0%0.0
SNpp621ACh0.10.0%0.0
IN00A042 (M)1GABA0.10.0%0.0
SNpp29,SNpp632ACh0.10.0%0.0
AN05B102d (R)1ACh0.10.0%0.0
DNd02 (R)1unc0.10.0%0.0
IN04B006 (R)1ACh0.00.0%0.0
SNpp311ACh0.00.0%0.0
IN00A034 (M)1GABA0.00.0%0.0
IN05B030 (L)1GABA0.00.0%0.0
AN09B002 (R)1ACh0.00.0%0.0
IN17A087 (R)1ACh0.00.0%0.0
AN08B049 (L)1ACh0.00.0%0.0
SApp041ACh0.00.0%0.0
AN05B023d (L)1GABA0.00.0%0.0
ANXXX264 (R)1GABA0.00.0%0.0
AN18B004 (R)1ACh0.00.0%0.0
IN09B049 (L)1Glu0.00.0%0.0
AN05B102c (L)1ACh0.00.0%0.0
IN17A042 (R)1ACh0.00.0%0.0
SNpp301ACh0.00.0%0.0
AN08B053 (R)1ACh0.00.0%0.0
AN08B089 (R)1ACh0.00.0%0.0
IN08B083_c (R)1ACh0.00.0%0.0
IN18B012 (R)1ACh0.00.0%0.0
IN17A034 (R)1ACh0.00.0%0.0
INXXX201 (L)1ACh0.00.0%0.0
AN00A009 (M)1GABA0.00.0%0.0
AN05B036 (L)1GABA0.00.0%0.0
IN05B016 (R)1GABA0.00.0%0.0
IN08B087 (R)1ACh0.00.0%0.0
AN09B024 (L)1ACh0.00.0%0.0
AN08B034 (L)1ACh0.00.0%0.0
IN17A090 (R)1ACh0.00.0%0.0