Male CNS – Cell Type Explorer

SNpp36(R)

2
Total Neurons
Right: 1 | Left: 1
log ratio : 0.00
333
Total Synapses
Post: 99 | Pre: 234
log ratio : 1.24
333
Mean Synapses
Post: 99 | Pre: 234
log ratio : 1.24
ACh(96.9% CL)
Neurotransmitter

Neuron Visualization

Dark Light

Navigation

🖱️ Left Mouse Button (LMB) + Drag
Rotate the view.
Shift + 🖱️ LMB + Drag
Translate the view.
Ctrl + Mousewheel
Zoom in and out.
⌨️ z
Reset view to closest
⌨️ o
Toggle between orthographic and perspective projection.
⌨️ l
Reassign random colors to neurons and ROI meshes.

Filtering

screenshot of neuroglancer filter section
1
Use text to filter neurons by type name.

2
Use tags to require or exclude neurons of certain properties, e.g. `soma_side`.

3
Add / remove matched neurons from view.

4
Remove currently selected neurons from view.

5
Toggle individual neurons from view.
?

ROI Innervation (7 ROIs)

ROI Name
In
%
In
log
ratio

Out
%
Out
WTct(UTct-T2)(R)4747.5%1.2511247.9%
HTct(UTct-T3)(R)1818.2%1.856527.8%
NTct(UTct-T1)(R)1313.1%1.052711.5%
IntTct44.0%2.39219.0%
VNC-unspecified1111.1%-1.4641.7%
ADMN(R)66.1%-inf00.0%
ANm00.0%inf52.1%

Connectivity

Inputs

upstream
partner
#NTconns
SNpp36
%
In
CV
IN03B070 (R)4GABA2026.0%0.5
AN06A060 (L)1GABA810.4%0.0
IN03B068 (R)1GABA67.8%0.0
EAXXX079 (R)1unc56.5%0.0
SNpp111ACh45.2%0.0
IN06B076 (L)1GABA45.2%0.0
IN03B038 (R)1GABA45.2%0.0
IN03B076 (R)1GABA33.9%0.0
IN06A101 (L)1GABA22.6%0.0
IN06A093 (L)1GABA22.6%0.0
SNpp081ACh22.6%0.0
IN06A051 (L)1GABA22.6%0.0
EAXXX079 (L)1unc22.6%0.0
IN03B080 (R)2GABA22.6%0.0
IN19A056 (R)1GABA11.3%0.0
IN06A108 (L)1GABA11.3%0.0
IN27X014 (L)1GABA11.3%0.0
IN06A002 (R)1GABA11.3%0.0
IN07B096_b (R)1ACh11.3%0.0
IN06B069 (L)1GABA11.3%0.0
IN03B069 (R)1GABA11.3%0.0
IN06A036 (L)1GABA11.3%0.0
IN11B012 (R)1GABA11.3%0.0
IN02A007 (R)1Glu11.3%0.0
AN06B031 (L)1GABA11.3%0.0

Outputs

downstream
partner
#NTconns
SNpp36
%
Out
CV
AN06B031 (L)1GABA248.8%0.0
IN17B004 (R)2GABA248.8%0.6
IN03B080 (R)3GABA238.5%0.4
IN06A038 (R)1Glu155.5%0.0
IN07B038 (R)1ACh134.8%0.0
IN11B005 (R)1GABA124.4%0.0
IN06A021 (R)1GABA114.0%0.0
IN19B008 (R)1ACh103.7%0.0
IN03B081 (R)3GABA103.7%0.6
IN07B094_a (R)1ACh82.9%0.0
IN03B076 (R)1GABA82.9%0.0
IN07B087 (R)2ACh82.9%0.5
AN19B060 (R)2ACh82.9%0.2
IN06B038 (L)1GABA51.8%0.0
AN19B059 (R)2ACh51.8%0.6
hg4 MN (R)1unc41.5%0.0
IN06A079 (R)1GABA31.1%0.0
IN03B086_d (L)1GABA31.1%0.0
IN03B086_c (R)1GABA31.1%0.0
IN03B070 (R)1GABA31.1%0.0
IN19B023 (L)1ACh31.1%0.0
ps2 MN (R)1unc31.1%0.0
IN19B023 (R)1ACh31.1%0.0
MNwm35 (R)1unc31.1%0.0
ANXXX033 (R)1ACh31.1%0.0
EAXXX079 (R)1unc31.1%0.0
AN17B005 (R)1GABA31.1%0.0
IN07B094_b (R)2ACh31.1%0.3
SNpp113ACh31.1%0.0
IN06B050 (L)1GABA20.7%0.0
IN03B091 (R)1GABA20.7%0.0
IN03B086_b (R)1GABA20.7%0.0
IN03B086_c (L)1GABA20.7%0.0
IN03B074 (R)1GABA20.7%0.0
IN03B090 (R)1GABA20.7%0.0
IN19B071 (R)1ACh20.7%0.0
iii3 MN (R)1unc20.7%0.0
IN02A007 (R)1Glu20.7%0.0
AN07B062 (R)1ACh20.7%0.0
IN11B023 (R)2GABA20.7%0.0
IN19B045, IN19B052 (R)1ACh10.4%0.0
IN03B086_b (L)1GABA10.4%0.0
IN11B013 (R)1GABA10.4%0.0
IN02A042 (R)1Glu10.4%0.0
IN13A013 (R)1GABA10.4%0.0
MNnm13 (R)1unc10.4%0.0
IN06B081 (L)1GABA10.4%0.0
IN03B077 (R)1GABA10.4%0.0
IN03B066 (R)1GABA10.4%0.0
IN03B086_e (L)1GABA10.4%0.0
IN06A071 (R)1GABA10.4%0.0
IN03B072 (R)1GABA10.4%0.0
IN03B078 (R)1GABA10.4%0.0
IN03B084 (R)1GABA10.4%0.0
IN06A033 (R)1GABA10.4%0.0
IN19B087 (R)1ACh10.4%0.0
SNpp071ACh10.4%0.0
IN03B038 (R)1GABA10.4%0.0
IN11B012 (R)1GABA10.4%0.0
IN17B015 (R)1GABA10.4%0.0
IN19B008 (L)1ACh10.4%0.0
EAXXX079 (L)1unc10.4%0.0
AN10B017 (R)1ACh10.4%0.0