Male CNS – Cell Type Explorer

SNpp07(R)

12
Total Neurons
Right: 6 | Left: 6
log ratio : 0.00
2,245
Total Synapses
Post: 368 | Pre: 1,877
log ratio : 2.35
374.2
Mean Synapses
Post: 61.3 | Pre: 312.8
log ratio : 2.35
ACh(96.7% CL)
Neurotransmitter

Neuron Visualization

Dark Light

Navigation

🖱️ Left Mouse Button (LMB) + Drag
Rotate the view.
Shift + 🖱️ LMB + Drag
Translate the view.
Ctrl + Mousewheel
Zoom in and out.
⌨️ z
Reset view to closest
⌨️ o
Toggle between orthographic and perspective projection.
⌨️ l
Reassign random colors to neurons and ROI meshes.

Filtering

screenshot of neuroglancer filter section
1
Use text to filter neurons by type name.

2
Use tags to require or exclude neurons of certain properties, e.g. `soma_side`.

3
Add / remove matched neurons from view.

4
Remove currently selected neurons from view.

5
Toggle individual neurons from view.
?

ROI Innervation (5 ROIs)

ROI Name
In
%
In
log
ratio

Out
%
Out
WTct(UTct-T2)(R)19151.9%2.581,14460.9%
IntTct6818.5%2.6241922.3%
Ov(R)6417.4%2.0125713.7%
ADMN(R)4010.9%-1.00201.1%
VNC-unspecified51.4%2.89372.0%

Connectivity

Inputs

upstream
partner
#NTconns
SNpp07
%
In
CV
AN17B005 (R)1GABA11.523.0%0.0
SNpp076ACh10.320.7%0.4
IN06B036 (L)2GABA2.75.3%0.0
IN06B043 (L)1GABA2.55.0%0.0
AN06B090 (L)1GABA1.83.7%0.0
IN01A024 (L)1ACh1.83.7%0.0
IN19A056 (R)3GABA1.53.0%0.5
SApp105ACh1.53.0%0.5
DNge096 (L)1GABA1.32.7%0.0
IN00A008 (M)1GABA1.32.7%0.0
IN00A004 (M)1GABA1.32.7%0.0
SApp143ACh1.32.7%0.5
DNg106 (R)3GABA12.0%0.4
SNpp101ACh0.81.7%0.0
IN16B059 (R)1Glu0.51.0%0.0
IN19A043 (R)2GABA0.51.0%0.3
SNpp111ACh0.30.7%0.0
IN12B002 (L)1GABA0.30.7%0.0
IN06B047 (L)1GABA0.30.7%0.0
IN06B014 (L)1GABA0.30.7%0.0
IN06B067 (L)1GABA0.30.7%0.0
SNpp621ACh0.30.7%0.0
IN17A060 (R)1Glu0.30.7%0.0
IN27X007 (R)1unc0.30.7%0.0
SNpp282ACh0.30.7%0.0
IN19B031 (R)1ACh0.30.7%0.0
SApp132ACh0.30.7%0.0
IN16B048 (R)1Glu0.30.7%0.0
IN03B043 (R)1GABA0.20.3%0.0
IN16B099 (R)1Glu0.20.3%0.0
IN06B076 (L)1GABA0.20.3%0.0
IN02A012 (R)1Glu0.20.3%0.0
AN05B096 (R)1ACh0.20.3%0.0
DNg07 (L)1ACh0.20.3%0.0
IN07B096_a (L)1ACh0.20.3%0.0
IN06B078 (L)1GABA0.20.3%0.0
IN06A037 (L)1GABA0.20.3%0.0
IN06B077 (L)1GABA0.20.3%0.0
IN07B026 (R)1ACh0.20.3%0.0
IN10B023 (L)1ACh0.20.3%0.0
IN17B015 (R)1GABA0.20.3%0.0
IN02A007 (R)1Glu0.20.3%0.0
IN02A040 (R)1Glu0.20.3%0.0
IN03B069 (R)1GABA0.20.3%0.0
IN08B068 (R)1ACh0.20.3%0.0
IN03B038 (R)1GABA0.20.3%0.0
IN19B045, IN19B052 (R)1ACh0.20.3%0.0
IN16B047 (R)1Glu0.20.3%0.0
SNpp361ACh0.20.3%0.0
IN12A061_c (R)1ACh0.20.3%0.0
IN06B066 (L)1GABA0.20.3%0.0
SNta061ACh0.20.3%0.0
IN27X007 (L)1unc0.20.3%0.0

Outputs

downstream
partner
#NTconns
SNpp07
%
Out
CV
IN19B031 (R)1ACh366.6%0.0
AN17B005 (R)1GABA26.24.8%0.0
IN03B058 (R)10GABA22.84.2%0.7
IN06B066 (L)7GABA20.73.8%1.2
IN05B010 (L)1GABA19.33.6%0.0
IN06B069 (L)4GABA15.72.9%0.9
IN17B015 (R)2GABA14.82.7%1.0
IN17B004 (R)2GABA142.6%0.9
IN06B043 (L)2GABA13.72.5%0.7
IN06B013 (L)1GABA13.32.5%0.0
DVMn 1a-c (R)3unc132.4%0.6
IN19B045, IN19B052 (R)2ACh122.2%0.0
IN12A061_c (R)2ACh10.72.0%0.3
IN03B069 (R)7GABA10.72.0%0.5
SNpp076ACh10.31.9%0.2
IN06A042 (R)3GABA9.71.8%1.2
IN19B041 (R)1ACh9.31.7%0.0
IN05B001 (R)1GABA81.5%0.0
IN16B063 (R)2Glu7.21.3%0.9
IN03B066 (R)3GABA71.3%0.3
IN27X014 (R)1GABA6.81.3%0.0
IN27X014 (L)1GABA6.81.3%0.0
IN02A042 (R)2Glu6.21.1%0.0
IN01A020 (R)1ACh61.1%0.0
IN12A061_d (R)1ACh5.71.0%0.0
IN12A035 (R)3ACh5.31.0%0.4
IN19B041 (L)1ACh5.20.9%0.0
IN19B045 (R)2ACh50.9%0.8
IN06A002 (R)1GABA4.80.9%0.0
hg4 MN (R)1unc4.70.9%0.0
IN19B055 (R)1ACh4.50.8%0.0
IN17B003 (R)1GABA4.30.8%0.0
IN02A013 (R)1Glu4.30.8%0.0
i2 MN (R)1ACh4.20.8%0.0
hg3 MN (R)1GABA4.20.8%0.0
INXXX076 (R)1ACh3.80.7%0.0
AN07B062 (R)3ACh3.80.7%0.3
IN12B002 (R)2GABA3.70.7%0.9
IN02A037 (R)1Glu3.70.7%0.0
IN06B014 (L)1GABA3.70.7%0.0
IN19B062 (L)1ACh3.70.7%0.0
AN06B090 (R)1GABA3.50.6%0.0
IN05B028 (R)1GABA3.50.6%0.0
IN19B072 (L)1ACh3.30.6%0.0
EN00B001 (M)1unc3.20.6%0.0
IN13A013 (R)1GABA30.6%0.0
IN08A011 (R)3Glu30.6%0.8
IN06A103 (R)3GABA2.80.5%0.4
hg3 MN (L)1GABA2.80.5%0.0
b3 MN (R)1unc2.80.5%0.0
IN12A012 (R)1GABA2.70.5%0.0
IN06B013 (R)1GABA2.70.5%0.0
MNwm35 (R)1unc2.70.5%0.0
IN19A026 (R)1GABA2.70.5%0.0
IN06A057 (R)2GABA2.50.5%0.7
IN12A046_b (R)1ACh2.50.5%0.0
IN14B007 (R)1GABA2.50.5%0.0
AN06B031 (L)1GABA2.30.4%0.0
IN19B066 (R)2ACh2.30.4%0.9
IN06B033 (R)1GABA2.20.4%0.0
IN11A032_e (R)1ACh2.20.4%0.0
IN19B037 (R)1ACh2.20.4%0.0
IN16B092 (R)2Glu20.4%0.2
IN19A056 (R)3GABA20.4%0.5
IN06A079 (R)1GABA1.80.3%0.0
IN06B036 (L)2GABA1.80.3%0.6
IN16B072 (R)1Glu1.80.3%0.0
IN06A103 (L)2GABA1.80.3%0.6
IN06A032 (R)1GABA1.80.3%0.0
DVMn 2a, b (R)2unc1.80.3%0.3
IN12B002 (L)2GABA1.80.3%0.8
IN18B016 (R)1ACh1.70.3%0.0
ANXXX132 (L)1ACh1.70.3%0.0
AN06B090 (L)1GABA1.50.3%0.0
IN13A022 (R)1GABA1.50.3%0.0
INXXX119 (L)1GABA1.50.3%0.0
IN12A007 (R)1ACh1.50.3%0.0
AN05B096 (R)1ACh1.50.3%0.0
AN17B016 (L)1GABA1.50.3%0.0
AN08B079_a (R)1ACh1.30.2%0.0
IN06A077 (R)2GABA1.30.2%0.2
IN06A086 (R)2GABA1.30.2%0.8
IN16B048 (R)1Glu1.30.2%0.0
IN19A142 (R)1GABA1.20.2%0.0
IN16B051 (R)1Glu1.20.2%0.0
IN08B104 (R)1ACh1.20.2%0.0
INXXX044 (R)1GABA1.20.2%0.0
IN12A061_a (R)1ACh1.20.2%0.0
IN06B085 (L)4GABA1.20.2%0.2
INXXX193 (R)1unc10.2%0.0
IN11B017_b (R)2GABA10.2%0.3
IN06A033 (R)2GABA10.2%0.3
tpn MN (R)1unc10.2%0.0
IN17A099 (R)2ACh10.2%0.3
IN02A040 (R)1Glu10.2%0.0
IN19A043 (R)1GABA10.2%0.0
SApp106ACh10.2%0.0
IN12A043_d (L)2ACh0.80.2%0.6
IN17A095 (R)1ACh0.80.2%0.0
IN00A045 (M)1GABA0.80.2%0.0
IN12A046_a (R)1ACh0.80.2%0.0
IN16B047 (R)1Glu0.80.2%0.0
IN16B062 (R)1Glu0.80.2%0.0
IN12A052_b (L)3ACh0.80.2%0.3
IN16B071 (R)2Glu0.80.2%0.2
IN16B059 (R)1Glu0.80.2%0.0
IN19B090 (L)1ACh0.70.1%0.0
IN12A043_b (L)1ACh0.70.1%0.0
DVMn 3a, b (R)2unc0.70.1%0.5
IN19B058 (R)1ACh0.70.1%0.0
IN17A112 (R)1ACh0.70.1%0.0
IN11B001 (L)1ACh0.70.1%0.0
IN06A008 (R)1GABA0.70.1%0.0
IN17A080,IN17A083 (R)2ACh0.70.1%0.0
IN01A024 (L)1ACh0.70.1%0.0
IN03B046 (R)2GABA0.70.1%0.5
IN12A018 (R)2ACh0.70.1%0.0
IN19A056 (L)1GABA0.50.1%0.0
IN19B048 (R)1ACh0.50.1%0.0
IN16B068_c (R)1Glu0.50.1%0.0
IN13B104 (L)1GABA0.50.1%0.0
IN03B058 (L)2GABA0.50.1%0.3
IN06A012 (R)1GABA0.50.1%0.0
IN19B067 (R)1ACh0.50.1%0.0
IN12A043_d (R)2ACh0.50.1%0.3
IN10B023 (L)1ACh0.50.1%0.0
IN07B038 (R)2ACh0.50.1%0.3
IN03B067 (R)2GABA0.50.1%0.3
IN17A104 (R)1ACh0.50.1%0.0
IN06A099 (L)3GABA0.50.1%0.0
DNge096 (L)1GABA0.50.1%0.0
ADNM1 MN (L)1unc0.50.1%0.0
tp2 MN (R)1unc0.50.1%0.0
IN06A099 (R)1GABA0.30.1%0.0
DNde006 (R)1Glu0.30.1%0.0
IN17A107 (R)1ACh0.30.1%0.0
IN11A028 (R)1ACh0.30.1%0.0
IN16B106 (R)1Glu0.30.1%0.0
IN12A050_a (R)1ACh0.30.1%0.0
AN17B002 (R)1GABA0.30.1%0.0
AN19B024 (R)1ACh0.30.1%0.0
AN02A001 (L)1Glu0.30.1%0.0
AN08B007 (L)1GABA0.30.1%0.0
vMS11 (R)1Glu0.30.1%0.0
IN17A027 (R)1ACh0.30.1%0.0
IN19B080 (R)1ACh0.30.1%0.0
IN11A020 (R)1ACh0.30.1%0.0
IN19B008 (R)1ACh0.30.1%0.0
IN03B072 (R)2GABA0.30.1%0.0
IN03B053 (R)1GABA0.30.1%0.0
AN07B089 (R)1ACh0.30.1%0.0
AN17B016 (R)1GABA0.30.1%0.0
SApp132ACh0.30.1%0.0
IN17A106_a (R)1ACh0.30.1%0.0
IN16B079 (R)1Glu0.30.1%0.0
IN03B061 (R)2GABA0.30.1%0.0
IN05B028 (L)1GABA0.30.1%0.0
IN02A007 (R)1Glu0.30.1%0.0
IN17A067 (R)1ACh0.30.1%0.0
IN12A043_c (R)1ACh0.30.1%0.0
AN12B089 (L)2GABA0.30.1%0.0
IN11B021_c (R)1GABA0.20.0%0.0
IN19B064 (L)1ACh0.20.0%0.0
IN17A075 (R)1ACh0.20.0%0.0
IN03B052 (R)1GABA0.20.0%0.0
IN07B038 (L)1ACh0.20.0%0.0
IN06B042 (L)1GABA0.20.0%0.0
AN10B008 (R)1ACh0.20.0%0.0
IN27X007 (R)1unc0.20.0%0.0
IN00A031 (M)1GABA0.20.0%0.0
dMS5 (L)1ACh0.20.0%0.0
IN08A040 (R)1Glu0.20.0%0.0
vMS13 (R)1GABA0.20.0%0.0
AN04A001 (R)1ACh0.20.0%0.0
IN11B016_c (R)1GABA0.20.0%0.0
vMS11 (L)1Glu0.20.0%0.0
MNnm13 (R)1unc0.20.0%0.0
IN06B078 (L)1GABA0.20.0%0.0
IN16B069 (R)1Glu0.20.0%0.0
IN12A044 (L)1ACh0.20.0%0.0
IN07B073_c (L)1ACh0.20.0%0.0
IN11B012 (R)1GABA0.20.0%0.0
IN06B019 (R)1GABA0.20.0%0.0
AN06A041 (R)1GABA0.20.0%0.0
AN08B079_b (R)1ACh0.20.0%0.0
SApp11,SApp181ACh0.20.0%0.0
IN19B043 (R)1ACh0.20.0%0.0
IN12A052_b (R)1ACh0.20.0%0.0
IN12A043_b (R)1ACh0.20.0%0.0
IN12A059_a (R)1ACh0.20.0%0.0
IN07B045 (R)1ACh0.20.0%0.0
IN06A019 (R)1GABA0.20.0%0.0
IN06A076_a (R)1GABA0.20.0%0.0
IN12A052_a (R)1ACh0.20.0%0.0
IN08B003 (R)1GABA0.20.0%0.0
IN13A013 (L)1GABA0.20.0%0.0
SApp141ACh0.20.0%0.0
AN02A001 (R)1Glu0.20.0%0.0
IN06B079 (L)1GABA0.20.0%0.0
IN19B103 (L)1ACh0.20.0%0.0
SNpp111ACh0.20.0%0.0
mesVUM-MJ (M)1unc0.20.0%0.0
IN02A012 (R)1Glu0.20.0%0.0
IN10B023 (R)1ACh0.20.0%0.0
IN23B006 (R)1ACh0.20.0%0.0
AN08B032 (L)1ACh0.20.0%0.0
IN03B091 (R)1GABA0.20.0%0.0
IN12A063_c (L)1ACh0.20.0%0.0
IN07B087 (R)1ACh0.20.0%0.0
IN00A008 (M)1GABA0.20.0%0.0
tp1 MN (R)1unc0.20.0%0.0
DNg106 (R)1GABA0.20.0%0.0
AN02A002 (R)1Glu0.20.0%0.0
IN12A015 (R)1ACh0.20.0%0.0
SNpp101ACh0.20.0%0.0
IN07B098 (L)1ACh0.20.0%0.0
IN12A060_b (R)1ACh0.20.0%0.0
IN19B083 (L)1ACh0.20.0%0.0
IN19B058 (L)1ACh0.20.0%0.0
IN06A045 (R)1GABA0.20.0%0.0
IN03B049 (R)1GABA0.20.0%0.0
IN17A034 (R)1ACh0.20.0%0.0
ANXXX250 (L)1GABA0.20.0%0.0
AN17A003 (R)1ACh0.20.0%0.0