Male CNS – Cell Type Explorer

SNpp05(R)

2
Total Neurons
Right: 1 | Left: 1
log ratio : 0.00
1,040
Total Synapses
Post: 227 | Pre: 813
log ratio : 1.84
1,040
Mean Synapses
Post: 227 | Pre: 813
log ratio : 1.84
ACh(97.1% CL)
Neurotransmitter

Neuron Visualization

Dark Light

Navigation

🖱️ Left Mouse Button (LMB) + Drag
Rotate the view.
Shift + 🖱️ LMB + Drag
Translate the view.
Ctrl + Mousewheel
Zoom in and out.
⌨️ z
Reset view to closest
⌨️ o
Toggle between orthographic and perspective projection.
⌨️ l
Reassign random colors to neurons and ROI meshes.

Filtering

screenshot of neuroglancer filter section
1
Use text to filter neurons by type name.

2
Use tags to require or exclude neurons of certain properties, e.g. `soma_side`.

3
Add / remove matched neurons from view.

4
Remove currently selected neurons from view.

5
Toggle individual neurons from view.
?

ROI Innervation (6 ROIs)

ROI Name
In
%
In
log
ratio

Out
%
Out
WTct(UTct-T2)(R)20289.0%1.8472489.1%
VNC-unspecified156.6%1.22354.3%
Ov(R)20.9%4.49455.5%
ADMN(R)73.1%0.0070.9%
IntTct10.4%0.0010.1%
NTct(UTct-T1)(R)00.0%inf10.1%

Connectivity

Inputs

upstream
partner
#NTconns
SNpp05
%
In
CV
IN19A056 (R)3GABA3519.9%0.3
IN19A056 (L)2GABA2916.5%0.2
IN06B066 (L)3GABA2313.1%0.5
IN06B052 (L)1GABA169.1%0.0
IN19A043 (R)2GABA137.4%0.4
IN06B083 (L)1GABA95.1%0.0
SNpp164ACh74.0%0.5
IN19A042 (R)2GABA63.4%0.7
IN19A043 (L)1GABA42.3%0.0
AN27X008 (L)1HA42.3%0.0
IN03B078 (R)1GABA31.7%0.0
IN19B058 (L)1ACh21.1%0.0
IN27X003 (L)1unc21.1%0.0
IN19B073 (L)1ACh21.1%0.0
IN17B001 (R)1GABA21.1%0.0
INXXX008 (L)1unc21.1%0.0
IN17B004 (R)1GABA21.1%0.0
vMS16 (R)1unc21.1%0.0
SNxx262ACh21.1%0.0
IN12B016 (R)1GABA10.6%0.0
IN06B052 (R)1GABA10.6%0.0
IN03B090 (R)1GABA10.6%0.0
IN17A097 (R)1ACh10.6%0.0
IN06B079 (L)1GABA10.6%0.0
IN17A082, IN17A086 (R)1ACh10.6%0.0
IN03B065 (R)1GABA10.6%0.0
INXXX472 (R)1GABA10.6%0.0
IN17B001 (L)1GABA10.6%0.0
AN27X008 (R)1HA10.6%0.0
DNge150 (M)1unc10.6%0.0

Outputs

downstream
partner
#NTconns
SNpp05
%
Out
CV
IN19B067 (R)6ACh1076.2%0.9
IN03B058 (R)5GABA1015.9%0.3
IN13A022 (R)3GABA985.7%0.7
IN19B086 (R)5ACh804.6%0.3
IN19B043 (R)4ACh784.5%0.5
IN17A085 (R)2ACh744.3%0.0
IN19B075 (R)4ACh683.9%0.2
IN08A011 (R)3Glu633.7%0.4
IN17A112 (R)2ACh523.0%0.5
IN00A047 (M)5GABA492.8%0.9
IN11B015 (R)2GABA452.6%0.0
DLMn a, b (L)1unc422.4%0.0
IN00A039 (M)2GABA422.4%0.4
IN11B013 (R)4GABA382.2%1.0
IN19A056 (R)3GABA372.1%0.6
IN19B043 (L)5ACh362.1%0.5
IN19B070 (R)3ACh342.0%0.1
IN19B057 (R)3ACh321.9%0.2
IN17B004 (R)2GABA311.8%0.5
IN19A056 (L)2GABA271.6%0.0
AN06B031 (L)1GABA261.5%0.0
IN17A097 (R)1ACh231.3%0.0
IN03B052 (R)2GABA231.3%0.3
IN03B058 (L)5GABA221.3%0.5
IN17A100 (R)1ACh211.2%0.0
IN19B067 (L)6ACh211.2%0.7
IN19B071 (R)5ACh181.0%0.6
IN17B015 (R)1GABA150.9%0.0
IN05B028 (L)1GABA150.9%0.0
IN18B042 (R)2ACh150.9%0.2
IN03B056 (R)1GABA140.8%0.0
IN11B015 (L)2GABA140.8%0.7
AN27X008 (R)1HA130.8%0.0
AN02A001 (L)1Glu130.8%0.0
IN19A142 (R)1GABA120.7%0.0
IN17A111 (R)3ACh120.7%0.4
IN05B028 (R)1GABA110.6%0.0
AN02A001 (R)1Glu110.6%0.0
AN08B097 (R)2ACh110.6%0.8
AN27X008 (L)1HA100.6%0.0
IN19B075 (L)2ACh100.6%0.8
IN19B056 (R)3ACh90.5%0.5
IN17A097 (L)1ACh80.5%0.0
IN16B062 (R)2Glu80.5%0.8
IN18B042 (L)2ACh80.5%0.5
IN17A099 (R)2ACh80.5%0.2
IN03B089 (R)4GABA80.5%0.6
IN11B025 (R)2GABA70.4%0.7
IN03B071 (R)3GABA70.4%0.8
IN19A043 (R)2GABA70.4%0.4
SNpp166ACh70.4%0.3
IN17A109 (R)1ACh60.3%0.0
DLMn a, b (R)1unc60.3%0.0
DLMn c-f (R)3unc60.3%0.7
IN12B016 (L)1GABA50.3%0.0
IN13B008 (L)1GABA50.3%0.0
IN08A040 (R)1Glu50.3%0.0
IN19B086 (L)2ACh50.3%0.6
IN17A118 (R)2ACh50.3%0.6
IN19B077 (L)2ACh50.3%0.2
IN06B066 (L)4GABA50.3%0.3
IN19B080 (R)1ACh40.2%0.0
IN17B001 (R)1GABA40.2%0.0
tpn MN (L)1unc40.2%0.0
EN00B001 (M)1unc40.2%0.0
IN17A111 (L)2ACh40.2%0.5
IN19A042 (R)2GABA40.2%0.5
DVMn 2a, b (R)2unc40.2%0.5
IN16B099 (R)3Glu40.2%0.4
IN12B016 (R)1GABA30.2%0.0
IN17A106_a (R)1ACh30.2%0.0
IN19B088 (R)1ACh30.2%0.0
IN00A022 (M)1GABA30.2%0.0
vMS13 (R)1GABA30.2%0.0
AN05B096 (R)1ACh30.2%0.0
IN17A064 (R)2ACh30.2%0.3
IN17A107 (R)1ACh20.1%0.0
SNpp271ACh20.1%0.0
IN03B057 (R)1GABA20.1%0.0
IN17A095 (R)1ACh20.1%0.0
IN16B069 (R)1Glu20.1%0.0
MNhl88 (R)1unc20.1%0.0
IN16B063 (R)1Glu20.1%0.0
IN08A040 (L)1Glu20.1%0.0
IN03B086_b (R)1GABA20.1%0.0
IN06A039 (R)1GABA20.1%0.0
IN12A018 (R)1ACh20.1%0.0
IN17B001 (L)1GABA20.1%0.0
IN13A013 (R)1GABA20.1%0.0
INXXX029 (R)1ACh20.1%0.0
IN05B010 (L)1GABA20.1%0.0
AN27X015 (R)1Glu20.1%0.0
AN07B062 (R)1ACh20.1%0.0
IN11B014 (R)2GABA20.1%0.0
IN03B054 (R)2GABA20.1%0.0
IN19B056 (L)2ACh20.1%0.0
IN03B053 (R)2GABA20.1%0.0
IN08A011 (L)2Glu20.1%0.0
IN19B045, IN19B052 (R)1ACh10.1%0.0
IN19B077 (R)1ACh10.1%0.0
IN07B031 (L)1Glu10.1%0.0
IN08B104 (R)1ACh10.1%0.0
IN03B091 (R)1GABA10.1%0.0
IN19B103 (L)1ACh10.1%0.0
IN19A043 (L)1GABA10.1%0.0
IN03B092 (R)1GABA10.1%0.0
IN03B090 (R)1GABA10.1%0.0
IN17A119 (R)1ACh10.1%0.0
IN17A100 (L)1ACh10.1%0.0
SNxx261ACh10.1%0.0
IN03B075 (R)1GABA10.1%0.0
IN06B079 (L)1GABA10.1%0.0
SNpp381ACh10.1%0.0
IN06B077 (L)1GABA10.1%0.0
IN19B041 (R)1ACh10.1%0.0
IN03B049 (R)1GABA10.1%0.0
vMS11 (R)1Glu10.1%0.0
IN27X003 (L)1unc10.1%0.0
IN07B031 (R)1Glu10.1%0.0
IN17A048 (R)1ACh10.1%0.0
IN07B038 (R)1ACh10.1%0.0
IN12A052_b (L)1ACh10.1%0.0
IN07B030 (R)1Glu10.1%0.0
tpn MN (R)1unc10.1%0.0
IN03B046 (R)1GABA10.1%0.0
IN03B052 (L)1GABA10.1%0.0
ps1 MN (R)1unc10.1%0.0
AN19B019 (L)1ACh10.1%0.0
vMS16 (R)1unc10.1%0.0
AN17B013 (R)1GABA10.1%0.0
DNge150 (M)1unc10.1%0.0