Male CNS – Cell Type Explorer

SNpp04(R)

4
Total Neurons
Right: 2 | Left: 2
log ratio : 0.00
1,374
Total Synapses
Post: 440 | Pre: 934
log ratio : 1.09
687
Mean Synapses
Post: 220 | Pre: 467
log ratio : 1.09
ACh(96.4% CL)
Neurotransmitter

Neuron Visualization

Dark Light

Navigation

🖱️ Left Mouse Button (LMB) + Drag
Rotate the view.
Shift + 🖱️ LMB + Drag
Translate the view.
Ctrl + Mousewheel
Zoom in and out.
⌨️ z
Reset view to closest
⌨️ o
Toggle between orthographic and perspective projection.
⌨️ l
Reassign random colors to neurons and ROI meshes.

Filtering

screenshot of neuroglancer filter section
1
Use text to filter neurons by type name.

2
Use tags to require or exclude neurons of certain properties, e.g. `soma_side`.

3
Add / remove matched neurons from view.

4
Remove currently selected neurons from view.

5
Toggle individual neurons from view.
?

ROI Innervation (9 ROIs)

ROI Name
In
%
In
log
ratio

Out
%
Out
WTct(UTct-T2)(R)22250.5%1.0847050.3%
IntTct6514.8%1.0913814.8%
Ov(R)4911.1%1.0410110.8%
HTct(UTct-T3)(R)286.4%2.0011212.0%
VNC-unspecified358.0%1.14778.2%
ADMN(R)296.6%-0.54202.1%
LegNp(T3)(R)112.5%-0.8760.6%
ANm10.2%3.0080.9%
LTct00.0%inf20.2%

Connectivity

Inputs

upstream
partner
#NTconns
SNpp04
%
In
CV
IN05B016 (L)2GABA4121.7%0.2
IN06B071 (L)3GABA3920.6%0.2
IN06B081 (L)3GABA27.514.6%1.0
IN00A008 (M)1GABA12.56.6%0.0
IN17B015 (R)1GABA115.8%0.0
IN03B070 (R)3GABA52.6%0.4
IN19A056 (R)3GABA52.6%0.3
IN05B016 (R)1GABA4.52.4%0.0
IN06B061 (L)2GABA42.1%0.8
IN06B076 (L)1GABA2.51.3%0.0
IN01A017 (L)1ACh21.1%0.0
INXXX044 (R)1GABA21.1%0.0
IN06B064 (L)1GABA21.1%0.0
SNpp303ACh21.1%0.4
SApp132ACh21.1%0.0
SNpp041ACh1.50.8%0.0
IN06B078 (L)2GABA1.50.8%0.3
IN17B004 (R)1GABA1.50.8%0.0
SApp102ACh1.50.8%0.3
SNpp332ACh1.50.8%0.3
SApp043ACh1.50.8%0.0
IN03B068 (R)1GABA10.5%0.0
IN06B017 (L)1GABA10.5%0.0
IN06B003 (L)1GABA10.5%0.0
IN03B067 (R)1GABA10.5%0.0
SNpp081ACh10.5%0.0
IN02A007 (R)1Glu10.5%0.0
IN03B066 (R)2GABA10.5%0.0
IN03B043 (R)1GABA0.50.3%0.0
IN16B092 (R)1Glu0.50.3%0.0
IN19A043 (R)1GABA0.50.3%0.0
IN11B019 (R)1GABA0.50.3%0.0
IN06B069 (L)1GABA0.50.3%0.0
IN06B036 (L)1GABA0.50.3%0.0
IN06B077 (L)1GABA0.50.3%0.0
IN06B078 (R)1GABA0.50.3%0.0
SNpp311ACh0.50.3%0.0
IN19B033 (L)1ACh0.50.3%0.0
IN27X007 (L)1unc0.50.3%0.0
IN05B012 (R)1GABA0.50.3%0.0
EAXXX079 (R)1unc0.50.3%0.0
SApp141ACh0.50.3%0.0
INXXX201 (L)1ACh0.50.3%0.0
IN12A007 (R)1ACh0.50.3%0.0
IN17A088, IN17A089 (R)1ACh0.50.3%0.0
IN06B013 (L)1GABA0.50.3%0.0
IN06B019 (R)1GABA0.50.3%0.0
AN27X008 (L)1HA0.50.3%0.0
AN18B004 (L)1ACh0.50.3%0.0
AN07B025 (L)1ACh0.50.3%0.0

Outputs

downstream
partner
#NTconns
SNpp04
%
Out
CV
IN06B077 (L)4GABA65.57.2%0.2
AN08B010 (R)2ACh434.7%0.2
AN06B089 (L)1GABA323.5%0.0
IN06B047 (L)6GABA323.5%0.5
IN17A049 (R)2ACh252.7%0.4
IN06B063 (R)5GABA252.7%0.5
IN17A048 (R)2ACh242.6%0.1
IN17A059,IN17A063 (R)2ACh23.52.6%0.3
IN06B003 (R)1GABA232.5%0.0
AN08B010 (L)2ACh192.1%0.9
INXXX201 (L)1ACh141.5%0.0
ps1 MN (R)1unc13.51.5%0.0
IN17A064 (R)2ACh13.51.5%0.6
INXXX044 (R)3GABA13.51.5%1.1
IN08B073 (R)1ACh13.51.5%0.0
AN07B045 (R)3ACh131.4%0.9
AN17A004 (R)1ACh12.51.4%0.0
IN08B036 (R)2ACh121.3%0.8
iii3 MN (R)1unc11.51.3%0.0
IN17A093 (R)2ACh11.51.3%0.6
IN08B080 (R)1ACh111.2%0.0
IN12A035 (R)3ACh111.2%0.4
IN00A056 (M)6GABA111.2%0.8
IN17A088, IN17A089 (R)3ACh111.2%0.5
IN17A078 (R)2ACh10.51.2%0.2
IN08B070_a (R)2ACh101.1%0.6
AN19B059 (R)3ACh101.1%0.7
IN00A008 (M)1GABA9.51.0%0.0
IN06B087 (L)2GABA9.51.0%0.4
AN19B098 (R)1ACh8.50.9%0.0
AN09B036 (L)1ACh8.50.9%0.0
IN01A017 (L)1ACh8.50.9%0.0
AN19B079 (R)1ACh8.50.9%0.0
IN06B078 (R)4GABA8.50.9%0.7
IN17B015 (R)1GABA6.50.7%0.0
IN17A099 (R)2ACh6.50.7%0.4
IN23B006 (R)1ACh6.50.7%0.0
AN19B032 (L)1ACh6.50.7%0.0
IN06B078 (L)2GABA60.7%0.7
IN12A050_a (R)1ACh60.7%0.0
IN12A007 (R)1ACh60.7%0.0
AN10B008 (R)1ACh60.7%0.0
vMS13 (R)1GABA5.50.6%0.0
iii1 MN (R)1unc5.50.6%0.0
IN17A057 (R)1ACh5.50.6%0.0
IN19A056 (R)3GABA5.50.6%0.5
IN12B014 (R)1GABA50.5%0.0
AN18B004 (R)1ACh50.5%0.0
IN17A090 (R)1ACh50.5%0.0
IN06B013 (L)2GABA50.5%0.8
IN07B083_d (R)1ACh50.5%0.0
AN06B031 (L)1GABA50.5%0.0
IN03B080 (R)2GABA50.5%0.6
IN11B013 (R)2GABA4.50.5%0.8
IN11B024_a (R)1GABA4.50.5%0.0
AN07B032 (R)1ACh4.50.5%0.0
IN19B023 (R)1ACh40.4%0.0
IN12A006 (R)1ACh40.4%0.0
DVMn 3a, b (R)2unc3.50.4%0.7
IN17A055 (R)1ACh3.50.4%0.0
IN06B067 (R)1GABA3.50.4%0.0
IN05B016 (L)2GABA3.50.4%0.4
SNpp303ACh3.50.4%0.8
IN00A057 (M)4GABA3.50.4%0.7
IN06B055 (R)1GABA30.3%0.0
AN18B004 (L)1ACh30.3%0.0
IN19B023 (L)1ACh30.3%0.0
IN17A023 (R)1ACh30.3%0.0
IN03B077 (R)1GABA30.3%0.0
AN10B017 (R)1ACh30.3%0.0
AN17B013 (R)2GABA30.3%0.0
IN11B014 (R)2GABA30.3%0.7
INXXX133 (R)1ACh2.50.3%0.0
AN27X009 (L)1ACh2.50.3%0.0
IN05B010 (L)1GABA2.50.3%0.0
IN19A043 (R)2GABA2.50.3%0.6
IN11B019 (R)2GABA2.50.3%0.6
IN11B018 (R)2GABA2.50.3%0.6
IN17A084 (R)1ACh20.2%0.0
tpn MN (R)1unc20.2%0.0
IN08B003 (R)1GABA20.2%0.0
AN27X009 (R)1ACh20.2%0.0
IN07B084 (R)1ACh20.2%0.0
IN06A045 (R)1GABA20.2%0.0
IN02A008 (L)1Glu20.2%0.0
AN07B062 (R)1ACh20.2%0.0
IN05B001 (R)1GABA20.2%0.0
AN05B052 (L)2GABA20.2%0.5
IN06B081 (L)2GABA20.2%0.5
IN19B086 (R)2ACh20.2%0.5
IN11B021_a (R)2GABA20.2%0.0
IN13A022 (R)2GABA20.2%0.5
IN06B071 (L)3GABA20.2%0.4
AN03B050 (R)1GABA1.50.2%0.0
IN00A054 (M)1GABA1.50.2%0.0
IN19B056 (R)1ACh1.50.2%0.0
IN17A027 (R)1ACh1.50.2%0.0
DVMn 1a-c (R)1unc1.50.2%0.0
IN18B015 (R)1ACh1.50.2%0.0
IN07B022 (R)1ACh1.50.2%0.0
AN05B053 (L)1GABA1.50.2%0.0
AN08B016 (R)1GABA1.50.2%0.0
AN06B044 (R)1GABA1.50.2%0.0
AN06B040 (R)1GABA1.50.2%0.0
IN07B094_b (R)1ACh1.50.2%0.0
SNpp041ACh1.50.2%0.0
IN06B042 (R)1GABA1.50.2%0.0
IN19B033 (L)1ACh1.50.2%0.0
IN06B019 (R)1GABA1.50.2%0.0
IN02A008 (R)1Glu1.50.2%0.0
AN07B100 (R)1ACh1.50.2%0.0
IN03B070 (R)2GABA1.50.2%0.3
IN17A080,IN17A083 (R)2ACh1.50.2%0.3
IN16B068_a (R)1Glu1.50.2%0.0
AN19B093 (R)2ACh1.50.2%0.3
SApp042ACh1.50.2%0.3
IN06A129 (R)1GABA1.50.2%0.0
IN06B061 (L)1GABA1.50.2%0.0
AN17A003 (R)1ACh1.50.2%0.0
IN17A107 (R)1ACh10.1%0.0
IN06A079 (R)1GABA10.1%0.0
IN16B068_c (R)1Glu10.1%0.0
IN05B016 (R)1GABA10.1%0.0
IN03B073 (R)1GABA10.1%0.0
IN11B021_c (R)1GABA10.1%0.0
IN17A113 (R)1ACh10.1%0.0
IN17A085 (R)1ACh10.1%0.0
IN17A118 (R)1ACh10.1%0.0
IN07B075 (R)1ACh10.1%0.0
IN06A033 (R)1GABA10.1%0.0
IN08B068 (R)1ACh10.1%0.0
IN08B039 (R)1ACh10.1%0.0
IN06A020 (R)1GABA10.1%0.0
IN03B034 (R)1GABA10.1%0.0
ps1 MN (L)1unc10.1%0.0
IN06B059 (R)1GABA10.1%0.0
IN08B006 (R)1ACh10.1%0.0
AN19B076 (R)1ACh10.1%0.0
AN23B002 (L)1ACh10.1%0.0
AN17A031 (R)1ACh10.1%0.0
AN08B009 (R)1ACh10.1%0.0
IN06A107 (R)1GABA10.1%0.0
IN07B087 (R)1ACh10.1%0.0
IN12B068_b (R)1GABA10.1%0.0
IN06B080 (R)1GABA10.1%0.0
IN07B038 (R)1ACh10.1%0.0
AN07B085 (R)1ACh10.1%0.0
AN07B021 (R)1ACh10.1%0.0
AN03B050 (L)1GABA10.1%0.0
AN17B005 (R)1GABA10.1%0.0
IN12A030 (R)1ACh10.1%0.0
IN06B079 (L)2GABA10.1%0.0
IN17A112 (R)2ACh10.1%0.0
IN17A067 (R)1ACh10.1%0.0
IN16B099 (R)1Glu10.1%0.0
IN06A021 (R)1GABA10.1%0.0
IN03B038 (R)1GABA10.1%0.0
IN07B096_b (R)2ACh10.1%0.0
IN19B057 (R)1ACh0.50.1%0.0
IN03B043 (R)1GABA0.50.1%0.0
IN11A027_a (R)1ACh0.50.1%0.0
SNpp091ACh0.50.1%0.0
IN19B033 (R)1ACh0.50.1%0.0
IN08B104 (R)1ACh0.50.1%0.0
MNad29 (R)1unc0.50.1%0.0
IN03B061 (R)1GABA0.50.1%0.0
IN03B069 (R)1GABA0.50.1%0.0
IN17A106_a (R)1ACh0.50.1%0.0
IN16B069 (R)1Glu0.50.1%0.0
IN12A050_b (R)1ACh0.50.1%0.0
IN16B063 (R)1Glu0.50.1%0.0
IN08B063 (R)1ACh0.50.1%0.0
IN08B083_a (R)1ACh0.50.1%0.0
IN03B046 (R)1GABA0.50.1%0.0
IN08B078 (R)1ACh0.50.1%0.0
dMS2 (R)1ACh0.50.1%0.0
IN16B079 (R)1Glu0.50.1%0.0
SNpp331ACh0.50.1%0.0
IN19B041 (L)1ACh0.50.1%0.0
IN11A022 (R)1ACh0.50.1%0.0
IN07B038 (L)1ACh0.50.1%0.0
IN08B075 (R)1ACh0.50.1%0.0
IN06B017 (L)1GABA0.50.1%0.0
IN19B053 (L)1ACh0.50.1%0.0
IN12A005 (R)1ACh0.50.1%0.0
IN03A045 (R)1ACh0.50.1%0.0
IN18B043 (R)1ACh0.50.1%0.0
IN07B075 (L)1ACh0.50.1%0.0
INXXX193 (R)1unc0.50.1%0.0
IN19B070 (R)1ACh0.50.1%0.0
IN19B020 (L)1ACh0.50.1%0.0
IN03B049 (R)1GABA0.50.1%0.0
MNhl59 (R)1unc0.50.1%0.0
IN19B008 (R)1ACh0.50.1%0.0
INXXX042 (L)1ACh0.50.1%0.0
IN05B030 (R)1GABA0.50.1%0.0
IN05B028 (L)1GABA0.50.1%0.0
IN19B008 (L)1ACh0.50.1%0.0
SApp131ACh0.50.1%0.0
SApp201ACh0.50.1%0.0
SApp101ACh0.50.1%0.0
AN09B013 (L)1ACh0.50.1%0.0
AN17B016 (L)1GABA0.50.1%0.0
AN17B016 (R)1GABA0.50.1%0.0
DNge097 (L)1Glu0.50.1%0.0
ANXXX027 (L)1ACh0.50.1%0.0
IN03B091 (R)1GABA0.50.1%0.0
SNpp621ACh0.50.1%0.0
IN06A086 (R)1GABA0.50.1%0.0
IN03B067 (R)1GABA0.50.1%0.0
IN08B093 (R)1ACh0.50.1%0.0
IN08B088 (R)1ACh0.50.1%0.0
IN07B083_b (R)1ACh0.50.1%0.0
IN06B085 (L)1GABA0.50.1%0.0
IN06B076 (L)1GABA0.50.1%0.0
IN03B076 (R)1GABA0.50.1%0.0
IN03B058 (R)1GABA0.50.1%0.0
IN17A095 (R)1ACh0.50.1%0.0
IN16B087 (R)1Glu0.50.1%0.0
IN16B072 (R)1Glu0.50.1%0.0
IN16B071 (R)1Glu0.50.1%0.0
IN08B091 (R)1ACh0.50.1%0.0
IN08B087 (R)1ACh0.50.1%0.0
IN06A038 (R)1Glu0.50.1%0.0
IN03B084 (R)1GABA0.50.1%0.0
IN02A013 (R)1Glu0.50.1%0.0
IN17B004 (R)1GABA0.50.1%0.0
MNwm36 (R)1unc0.50.1%0.0
MNwm35 (R)1unc0.50.1%0.0
AN19B001 (L)1ACh0.50.1%0.0
EA00B006 (M)1unc0.50.1%0.0
SApp141ACh0.50.1%0.0
AN02A001 (L)1Glu0.50.1%0.0