Male CNS – Cell Type Explorer

SApp20

2
Total Neurons
Right: 1 | Left: 1
log ratio : 0.00
1,125
Total Synapses
Right: 575 | Left: 550
log ratio : -0.06
562.5
Mean Synapses
Right: 575 | Left: 550
log ratio : -0.06
ACh(74.5% CL)
Neurotransmitter

Neuron Visualization

Dark Light

Navigation

🖱️ Left Mouse Button (LMB) + Drag
Rotate the view.
Shift + 🖱️ LMB + Drag
Translate the view.
Ctrl + Mousewheel
Zoom in and out.
⌨️ z
Reset view to closest
⌨️ o
Toggle between orthographic and perspective projection.
⌨️ l
Reassign random colors to neurons and ROI meshes.

Filtering

screenshot of neuroglancer filter section
1
Use text to filter neurons by type name.

2
Use tags to require or exclude neurons of certain properties, e.g. `soma_side`.

3
Add / remove matched neurons from view.

4
Remove currently selected neurons from view.

5
Toggle individual neurons from view.
?

ROI Innervation (9 ROIs)

ROI Name
In
%
In
log
ratio

Out
%
Out
WTct(UTct-T2)35059.2%-0.2928653.6%
GNG17028.8%0.0918133.9%
ADMN406.8%-1.62132.4%
NTct(UTct-T1)122.0%1.46336.2%
IntTct40.7%1.91152.8%
AMMC91.5%-0.8550.9%
CV-unspecified30.5%-1.5810.2%
CentralBrain-unspecified20.3%-inf00.0%
VNC-unspecified10.2%-inf00.0%

Connectivity

Inputs

upstream
partner
#NTconns
SApp20
%
In
CV
IN06A0447GABA77.529.8%0.7
GNG3022GABA4416.9%0.0
IN06A0703GABA3915.0%0.5
AN07B0042ACh15.56.0%0.0
IN06B0173GABA11.54.4%0.5
AN06B0372GABA114.2%0.0
IN06B0363GABA93.5%0.5
SApp19,SApp215ACh72.7%0.5
DNge152 (M)1unc6.52.5%0.0
IN06A0232GABA5.52.1%0.0
IN06B0433GABA51.9%0.5
SApp11,SApp185ACh3.51.3%0.3
AN02A0051Glu20.8%0.0
5-HTPMPV0315-HT20.8%0.0
IN06A0033GABA20.8%0.2
GNG2511Glu1.50.6%0.0
IN03B0731GABA1.50.6%0.0
GNG6341GABA10.4%0.0
IN19B0661ACh10.4%0.0
IN03B0651GABA10.4%0.0
DNae0092ACh10.4%0.0
IN11B0251GABA0.50.2%0.0
IN02A0401Glu0.50.2%0.0
SNpp351ACh0.50.2%0.0
IN12A052_a1ACh0.50.2%0.0
GNG6361GABA0.50.2%0.0
EAXXX0791unc0.50.2%0.0
AN07B0851ACh0.50.2%0.0
PS2411ACh0.50.2%0.0
AN07B0411ACh0.50.2%0.0
CB27921GABA0.50.2%0.0
IN11B022_a1GABA0.50.2%0.0
SNpp041ACh0.50.2%0.0
IN07B0471ACh0.50.2%0.0
IN08B051_d1ACh0.50.2%0.0
IN19A1421GABA0.50.2%0.0
IN03B0381GABA0.50.2%0.0
IN27X0071unc0.50.2%0.0
IN02A0071Glu0.50.2%0.0
i1 MN1ACh0.50.2%0.0
AN07B069_b1ACh0.50.2%0.0
CB40621GABA0.50.2%0.0
SApp101ACh0.50.2%0.0
GNG4541Glu0.50.2%0.0
GNG6521unc0.50.2%0.0

Outputs

downstream
partner
#NTconns
SApp20
%
Out
CV
IN06A0034GABA64.511.4%0.6
IN17B0043GABA55.59.8%0.6
b3 MN2unc49.58.7%0.0
i1 MN2ACh457.9%0.0
GNG6522unc223.9%0.0
CB16014GABA20.53.6%0.5
IN06A0759GABA19.53.4%0.6
IN17B0012GABA193.4%0.0
GNG6473unc14.52.6%0.5
AN02A0012Glu142.5%0.0
GNG2512Glu142.5%0.0
DNge1072GABA111.9%0.0
GNG6364GABA101.8%0.3
GNG3326GABA8.51.5%0.7
GNG430_a2ACh8.51.5%0.0
IN06A0446GABA81.4%0.6
IN11B0012ACh71.2%0.0
GNG3022GABA6.51.1%0.0
DNa102ACh61.1%0.0
DNge0152ACh5.51.0%0.0
GNG430_b2ACh5.51.0%0.0
IN19B0672ACh50.9%0.0
GNG6482unc50.9%0.0
AOTU0511GABA4.50.8%0.0
PS2214ACh4.50.8%0.3
SApp19,SApp214ACh40.7%0.4
AN17B0022GABA40.7%0.0
ADNM1 MN2unc40.7%0.0
IN06A0702GABA3.50.6%0.7
IN02A0403Glu3.50.6%0.4
MNhm422unc3.50.6%0.0
IN19B0431ACh30.5%0.0
DNg762ACh30.5%0.0
WED1611ACh2.50.4%0.0
DNg271Glu2.50.4%0.0
CB01222ACh2.50.4%0.0
DNge1082ACh2.50.4%0.0
IN06A076_a2GABA2.50.4%0.0
IN08B051_d3ACh2.50.4%0.0
IN12A052_b2ACh2.50.4%0.0
DNge0931ACh20.4%0.0
PS2781Glu20.4%0.0
GNG1261GABA20.4%0.0
SApp103ACh20.4%0.4
IN06A0022GABA20.4%0.0
MNnm112unc20.4%0.0
IN03B0892GABA20.4%0.0
MNhm432unc20.4%0.0
AN06B0312GABA20.4%0.0
GNG4402GABA20.4%0.0
AN06B0142GABA20.4%0.0
IN19B0711ACh1.50.3%0.0
IN13A0131GABA1.50.3%0.0
DNge0951ACh1.50.3%0.0
SApp11,SApp182ACh1.50.3%0.3
CB19182GABA1.50.3%0.3
DNg103GABA1.50.3%0.0
GNG4542Glu1.50.3%0.0
IN02A0432Glu1.50.3%0.0
IN02A0493Glu1.50.3%0.0
AN07B0042ACh1.50.3%0.0
IN03B0771GABA10.2%0.0
IN02A0371Glu10.2%0.0
IN07B0471ACh10.2%0.0
IN06B0171GABA10.2%0.0
CB14961GABA10.2%0.0
CB02141GABA10.2%0.0
DNge1831ACh10.2%0.0
CB05171Glu10.2%0.0
IN19B0701ACh10.2%0.0
IN06A067_c1GABA10.2%0.0
IN17A1041ACh10.2%0.0
IN12A043_d1ACh10.2%0.0
IN19B0021ACh10.2%0.0
hg1 MN1ACh10.2%0.0
i2 MN1ACh10.2%0.0
GNG1441GABA10.2%0.0
PS2411ACh10.2%0.0
CB40621GABA10.2%0.0
AN06B0371GABA10.2%0.0
DNg781ACh10.2%0.0
IN08A0112Glu10.2%0.0
IN07B0842ACh10.2%0.0
IN03B0642GABA10.2%0.0
GNG3862GABA10.2%0.0
IN17A0481ACh0.50.1%0.0
DVMn 3a, b1unc0.50.1%0.0
IN03B0661GABA0.50.1%0.0
IN06B0361GABA0.50.1%0.0
IN02A0471Glu0.50.1%0.0
IN03B0941GABA0.50.1%0.0
IN02A0421Glu0.50.1%0.0
IN06B0661GABA0.50.1%0.0
IN06B0711GABA0.50.1%0.0
IN19B0341ACh0.50.1%0.0
hg4 MN1unc0.50.1%0.0
DVMn 1a-c1unc0.50.1%0.0
DNae0091ACh0.50.1%0.0
GNG4221GABA0.50.1%0.0
PS117_b1Glu0.50.1%0.0
PS1161Glu0.50.1%0.0
DNg061ACh0.50.1%0.0
GNG6171Glu0.50.1%0.0
CB39531ACh0.50.1%0.0
PS3231GABA0.50.1%0.0
GNG3251Glu0.50.1%0.0
CB12821ACh0.50.1%0.0
LPT1141GABA0.50.1%0.0
DNge1141ACh0.50.1%0.0
PS2091ACh0.50.1%0.0
DNge1101ACh0.50.1%0.0
AN10B0171ACh0.50.1%0.0
CB09821GABA0.50.1%0.0
AN27X0151Glu0.50.1%0.0
GNG6491unc0.50.1%0.0
GNG2831unc0.50.1%0.0
DNae0031ACh0.50.1%0.0
dMS51ACh0.50.1%0.0
IN03B0901GABA0.50.1%0.0
IN12A060_b1ACh0.50.1%0.0
SNpp261ACh0.50.1%0.0
IN03B0521GABA0.50.1%0.0
IN06B0431GABA0.50.1%0.0
IN02A0201Glu0.50.1%0.0
IN07B0311Glu0.50.1%0.0
MNhm031unc0.50.1%0.0
IN02A0261Glu0.50.1%0.0
PLP1781Glu0.50.1%0.0
SApp041ACh0.50.1%0.0
DNge1791GABA0.50.1%0.0
GNG3261Glu0.50.1%0.0
AN07B0411ACh0.50.1%0.0
DNge0711GABA0.50.1%0.0
GNG6351GABA0.50.1%0.0
DNg071ACh0.50.1%0.0
GNG5451ACh0.50.1%0.0
PS0581ACh0.50.1%0.0
5-HTPMPV0315-HT0.50.1%0.0