Male CNS – Cell Type Explorer

Nod5(L)

2
Total Neurons
Right: 1 | Left: 1
log ratio : 0.00
4,880
Total Synapses
Post: 3,670 | Pre: 1,210
log ratio : -1.60
4,880
Mean Synapses
Post: 3,670 | Pre: 1,210
log ratio : -1.60
ACh(96.3% CL)
Neurotransmitter

Mean Synapse Count per Layer

 
Post
Pre
LA
-
-
ME 1ME 2ME 3ME 4ME 5ME 6ME 7ME 8ME 9ME 10Total
-----------
-----------
 
Post
Pre
LO 1LO 2LO 3LO 4LO 5ALO 5BLO 6Total
77111--17
-1-----1
AME
-
-
 
Post
Pre
LOP 1LOP 2LOP 3LOP 4Total
3428391,5805273,288
66211666349
central brain
284
848

Population spatial coverage

Neuron Visualization

Dark Light

Navigation

🖱️ Left Mouse Button (LMB) + Drag
Rotate the view.
Shift + 🖱️ LMB + Drag
Translate the view.
Ctrl + Mousewheel
Zoom in and out.
⌨️ z
Reset view to closest
⌨️ o
Toggle between orthographic and perspective projection.
⌨️ l
Reassign random colors to neurons and ROI meshes.

Filtering

screenshot of neuroglancer filter section
1
Use text to filter neurons by type name.

2
Use tags to require or exclude neurons of certain properties, e.g. `soma_side`.

3
Add / remove matched neurons from view.

4
Remove currently selected neurons from view.

5
Toggle individual neurons from view.
?

ROI Innervation (10 ROIs)

ROI Name
In
%
In
log
ratio

Out
%
Out
LOP(L)3,28889.6%-3.2434928.8%
IPS(R)1915.2%1.6158448.3%
WED(R)441.2%1.8315612.9%
LAL(R)220.6%1.75746.1%
Optic-unspecified(L)812.2%-2.75121.0%
GNG90.2%1.22211.7%
CentralBrain-unspecified150.4%-1.9140.3%
LO(L)170.5%-4.0910.1%
LAL(L)20.1%2.1790.7%
PLP(L)10.0%-inf00.0%

Connectivity

Inputs

upstream
partner
#NTconns
Nod5
%
In
CV
T4c (L)236ACh62317.8%0.6
T5c (L)212ACh53815.3%0.8
LPi12 (L)2GABA2376.8%0.0
Tlp14 (L)23Glu1504.3%0.7
T5d (L)65ACh1323.8%0.7
PS321 (L)1GABA1213.5%0.0
DCH (R)1GABA1183.4%0.0
LPi2c (L)21Glu1173.3%0.8
TmY13 (L)43ACh1113.2%0.5
T4d (L)59ACh1063.0%0.6
H1 (R)1Glu1002.9%0.0
Y11 (L)38Glu1002.9%0.8
VCH (R)1GABA992.8%0.0
TmY3 (L)47ACh992.8%0.6
Tlp13 (L)36Glu912.6%0.7
T5b (L)35ACh541.5%0.6
T4b (L)39ACh501.4%0.4
TmY15 (L)22GABA361.0%0.6
MeVPLp1 (R)1ACh320.9%0.0
MeVPLp1 (L)1ACh300.9%0.0
LPi4b (L)1GABA280.8%0.0
Tlp11 (L)17Glu280.8%0.7
TmY5a (L)21Glu270.8%0.4
LPC1 (L)18ACh220.6%0.4
LPT23 (L)3ACh200.6%0.1
Y13 (L)13Glu180.5%0.5
Tlp12 (L)14Glu180.5%0.4
OLVC5 (R)1ACh160.5%0.0
PS072 (R)4GABA160.5%0.7
TmY4 (L)13ACh150.4%0.3
PS070 (R)1GABA140.4%0.0
TmY17 (L)12ACh140.4%0.3
LPi2b (L)1GABA130.4%0.0
LPT115 (L)3GABA120.3%0.2
Y12 (L)11Glu120.3%0.3
LPi21 (L)1GABA110.3%0.0
Tm4 (L)2ACh100.3%0.8
LPi2d (L)6Glu90.3%0.5
LPT111 (L)7GABA90.3%0.4
OA-AL2i1 (L)1unc80.2%0.0
LOLP1 (L)5GABA80.2%0.5
LPi3a (L)7Glu80.2%0.3
TmY20 (L)8ACh80.2%0.0
PS099_b (L)1Glu70.2%0.0
H2 (L)1ACh70.2%0.0
GNG442 (L)2ACh70.2%0.4
MeVPOL1 (R)1ACh60.2%0.0
LPT116 (L)2GABA60.2%0.7
Y3 (L)5ACh60.2%0.3
TmY21 (L)5ACh60.2%0.3
TmY16 (L)2Glu50.1%0.6
T5a (L)3ACh50.1%0.6
LPT51 (L)2Glu50.1%0.2
OA-VUMa1 (M)2OA50.1%0.2
LPC2 (L)4ACh50.1%0.3
LPi2e (L)4Glu50.1%0.3
TmY18 (L)4ACh50.1%0.3
LLPC3 (L)5ACh50.1%0.0
Am1 (L)1GABA40.1%0.0
VCH (L)1GABA40.1%0.0
PS077 (R)3GABA40.1%0.4
LPi43 (L)3Glu40.1%0.4
LLPC2 (L)3ACh40.1%0.4
LPT31 (R)3ACh40.1%0.4
LLPC1 (L)4ACh40.1%0.0
LPi3412 (L)4Glu40.1%0.0
PS047_b (R)1ACh30.1%0.0
PS048_b (R)1ACh30.1%0.0
LPT114 (L)1GABA30.1%0.0
Nod3 (L)1ACh30.1%0.0
PPM1205 (R)1DA30.1%0.0
AN06B009 (R)1GABA30.1%0.0
5-HTPMPV03 (L)15-HT30.1%0.0
TmY9a (L)2ACh30.1%0.3
OA-VUMa4 (M)2OA30.1%0.3
LPLC4 (L)3ACh30.1%0.0
PS047_a (R)1ACh20.1%0.0
GNG547 (R)1GABA20.1%0.0
PS209 (L)1ACh20.1%0.0
SAD013 (L)1GABA20.1%0.0
DNge092 (L)1ACh20.1%0.0
CB0086 (R)1GABA20.1%0.0
M_vPNml50 (L)1GABA20.1%0.0
VA1v_vPN (L)1GABA20.1%0.0
LoVC13 (L)1GABA20.1%0.0
GNG497 (R)1GABA20.1%0.0
GNG660 (R)1GABA20.1%0.0
PLP060 (R)1GABA20.1%0.0
OLVC3 (R)1ACh20.1%0.0
Li31 (L)1Glu20.1%0.0
LPi4a (L)2Glu20.1%0.0
T4a (L)2ACh20.1%0.0
LPLC2 (L)2ACh20.1%0.0
TmY19a (L)2GABA20.1%0.0
TmY9b (L)1ACh10.0%0.0
DNp27 (L)1ACh10.0%0.0
Tm2 (L)1ACh10.0%0.0
Tm3 (L)1ACh10.0%0.0
ExR8 (R)1ACh10.0%0.0
PVLP204m (L)1ACh10.0%0.0
LPT114 (R)1GABA10.0%0.0
CB0675 (R)1ACh10.0%0.0
CB1339 (R)1ACh10.0%0.0
Y14 (L)1Glu10.0%0.0
LPi3b (L)1Glu10.0%0.0
ExR2 (R)1DA10.0%0.0
LPi34 (L)1Glu10.0%0.0
LPT113 (L)1GABA10.0%0.0
SAD005 (R)1ACh10.0%0.0
DNge115 (L)1ACh10.0%0.0
GNG411 (L)1Glu10.0%0.0
PS261 (R)1ACh10.0%0.0
DNg09_a (L)1ACh10.0%0.0
DNb03 (R)1ACh10.0%0.0
WED121 (R)1GABA10.0%0.0
LAL120_b (R)1Glu10.0%0.0
LAL111 (R)1GABA10.0%0.0
DNge086 (R)1GABA10.0%0.0
PS057 (R)1Glu10.0%0.0
HST (R)1ACh10.0%0.0
PS048_a (R)1ACh10.0%0.0
MeVPLo1 (L)1Glu10.0%0.0
AN04B003 (R)1ACh10.0%0.0
AN06B009 (L)1GABA10.0%0.0
LPT59 (R)1Glu10.0%0.0
H1 (L)1Glu10.0%0.0
Nod4 (L)1ACh10.0%0.0
LPT57 (R)1ACh10.0%0.0
LoVC11 (R)1GABA10.0%0.0
OA-AL2i1 (R)1unc10.0%0.0

Outputs

downstream
partner
#NTconns
Nod5
%
Out
CV
DCH (L)1GABA33311.7%0.0
PS047_b (R)1ACh31010.9%0.0
PS047_a (R)1ACh2679.4%0.0
VCH (L)1GABA2408.4%0.0
DNb03 (R)2ACh2388.4%0.2
Am1 (L)1GABA2177.6%0.0
VCH (R)1GABA792.8%0.0
LPT22 (L)1GABA562.0%0.0
DCH (R)1GABA551.9%0.0
PS048_a (R)1ACh541.9%0.0
Tlp13 (L)22Glu391.4%0.5
H1 (L)1Glu341.2%0.0
LOLP1 (L)18GABA311.1%0.5
Y3 (L)24ACh270.9%0.3
PS197 (R)2ACh260.9%0.7
H2 (L)1ACh250.9%0.0
TmY20 (L)21ACh250.9%0.3
LPLC1 (L)13ACh220.8%0.8
LAL167 (R)2ACh210.7%0.5
AOTU052 (R)2GABA200.7%0.1
WED121 (R)1GABA190.7%0.0
PS321 (R)1GABA190.7%0.0
PS307 (R)1Glu190.7%0.0
TmY15 (L)16GABA190.7%0.3
PS077 (R)4GABA170.6%0.8
CB4062 (R)3GABA170.6%0.5
TmY5a (L)15Glu170.6%0.3
LPi21 (L)1GABA160.6%0.0
LPC1 (L)11ACh140.5%0.5
LLPC1 (L)13ACh140.5%0.2
PS090 (R)1GABA130.5%0.0
DNge148 (R)1ACh130.5%0.0
PS048_b (R)1ACh120.4%0.0
MeVC11 (R)1ACh120.4%0.0
PS072 (R)6GABA120.4%0.7
PS099_b (L)1Glu110.4%0.0
PS321 (L)1GABA110.4%0.0
LPT51 (L)2Glu110.4%0.1
Tlp12 (L)9Glu110.4%0.3
LAL116 (R)1ACh100.4%0.0
CB1282 (R)2ACh100.4%0.2
SpsP (R)2Glu100.4%0.2
LAL166 (R)1ACh90.3%0.0
MBON20 (R)1GABA90.3%0.0
ExR6 (R)1Glu90.3%0.0
OA-AL2i1 (L)1unc90.3%0.0
LPi12 (L)2GABA90.3%0.3
PLP019 (R)1GABA80.3%0.0
LPT23 (L)3ACh80.3%0.9
LAL117 (R)2ACh80.3%0.5
LAL165 (R)1ACh70.2%0.0
PLP177 (R)1ACh70.2%0.0
5-HTPMPV03 (L)15-HT70.2%0.0
LAL085 (R)2Glu70.2%0.1
PS234 (R)1ACh60.2%0.0
PS070 (R)1GABA60.2%0.0
GNG283 (R)1unc60.2%0.0
PS081 (R)1Glu60.2%0.0
CB0582 (R)1GABA60.2%0.0
LPT50 (L)1GABA60.2%0.0
5-HTPMPV03 (R)15-HT60.2%0.0
MeVCMe1 (R)2ACh60.2%0.7
PS336 (R)2Glu60.2%0.3
FB4Y (R)15-HT50.2%0.0
PS018 (R)1ACh50.2%0.0
LPi4b (L)1GABA50.2%0.0
CB2792 (R)2GABA50.2%0.6
LPi3b (L)3Glu50.2%0.3
TmY14 (L)5unc50.2%0.0
SAD013 (L)1GABA40.1%0.0
PVLP030 (R)1GABA40.1%0.0
vCal1 (L)1Glu40.1%0.0
LPi3412 (L)3Glu40.1%0.4
PS194 (R)2Glu40.1%0.0
TmY13 (L)4ACh40.1%0.0
ExR8 (R)1ACh30.1%0.0
CB0675 (R)1ACh30.1%0.0
PS328 (R)1GABA30.1%0.0
GNG624 (L)1ACh30.1%0.0
LAL204 (R)1ACh30.1%0.0
CB3740 (R)1GABA30.1%0.0
PS338 (L)1Glu30.1%0.0
DNg41 (R)1Glu30.1%0.0
PS099_b (R)1Glu30.1%0.0
PLP249 (R)1GABA30.1%0.0
DNpe023 (L)1ACh30.1%0.0
H1 (R)1Glu30.1%0.0
OA-AL2i2 (R)1OA30.1%0.0
VES041 (L)1GABA30.1%0.0
MeVC11 (L)1ACh30.1%0.0
CB3746 (R)2GABA30.1%0.3
DNb02 (R)2Glu30.1%0.3
Tlp14 (L)3Glu30.1%0.0
LLPC3 (L)3ACh30.1%0.0
T4c (L)3ACh30.1%0.0
LLPC2 (L)3ACh30.1%0.0
WED071 (L)1Glu20.1%0.0
WED040_a (R)1Glu20.1%0.0
PS337 (L)1Glu20.1%0.0
LPT113 (L)1GABA20.1%0.0
WED018 (R)1ACh20.1%0.0
VES040 (R)1ACh20.1%0.0
PS055 (R)1GABA20.1%0.0
LAL164 (R)1ACh20.1%0.0
CB1421 (R)1GABA20.1%0.0
FB3A (L)1Glu20.1%0.0
LAL304m (R)1ACh20.1%0.0
LAL145 (R)1ACh20.1%0.0
GNG497 (R)1GABA20.1%0.0
PS232 (R)1ACh20.1%0.0
mALD4 (L)1GABA20.1%0.0
LPT22 (R)1GABA20.1%0.0
WED203 (R)1GABA20.1%0.0
LNO2 (R)1Glu20.1%0.0
OA-AL2i1 (R)1unc20.1%0.0
H2 (R)1ACh20.1%0.0
LPT100 (L)2ACh20.1%0.0
TmY3 (L)2ACh20.1%0.0
WED128 (R)2ACh20.1%0.0
Y11 (L)2Glu20.1%0.0
TmY4 (L)2ACh20.1%0.0
PS292 (R)2ACh20.1%0.0
LAL056 (R)2GABA20.1%0.0
T4d (L)2ACh20.1%0.0
T5b (L)2ACh20.1%0.0
T5c (L)2ACh20.1%0.0
T5a (L)2ACh20.1%0.0
LPi2d (L)2Glu20.1%0.0
CB2514 (R)2ACh20.1%0.0
LPi4a (L)2Glu20.1%0.0
Tm23 (L)2GABA20.1%0.0
LPLC2 (L)2ACh20.1%0.0
LPi2c (L)2Glu20.1%0.0
DNp12 (R)1ACh10.0%0.0
LPsP (R)1ACh10.0%0.0
DNb02 (L)1Glu10.0%0.0
LAL126 (R)1Glu10.0%0.0
DNa06 (R)1ACh10.0%0.0
DNa02 (L)1ACh10.0%0.0
LPi2b (L)1GABA10.0%0.0
Tm16 (L)1ACh10.0%0.0
FB3A (R)1Glu10.0%0.0
LPT114 (L)1GABA10.0%0.0
LAL009 (L)1ACh10.0%0.0
LPC2 (L)1ACh10.0%0.0
LAL096 (R)1Glu10.0%0.0
T4b (L)1ACh10.0%0.0
LPi2e (L)1Glu10.0%0.0
LAL131 (R)1Glu10.0%0.0
GNG382 (L)1Glu10.0%0.0
SAD005 (R)1ACh10.0%0.0
WED162 (R)1ACh10.0%0.0
VSm (L)1ACh10.0%0.0
CB1805 (R)1Glu10.0%0.0
CB4066 (R)1GABA10.0%0.0
CB2235 (R)1GABA10.0%0.0
Y14 (L)1Glu10.0%0.0
WED096 (R)1Glu10.0%0.0
CB3748 (R)1GABA10.0%0.0
WED151 (R)1ACh10.0%0.0
LPT113 (R)1GABA10.0%0.0
PS054 (R)1GABA10.0%0.0
WED028 (R)1GABA10.0%0.0
LAL059 (R)1GABA10.0%0.0
CB0194 (L)1GABA10.0%0.0
GNG442 (L)1ACh10.0%0.0
DNge115 (L)1ACh10.0%0.0
GNG442 (R)1ACh10.0%0.0
CB2270 (R)1ACh10.0%0.0
FB6M (R)1Glu10.0%0.0
TmY21 (L)1ACh10.0%0.0
LPLC4 (L)1ACh10.0%0.0
TmY19a (L)1GABA10.0%0.0
LAL171 (R)1ACh10.0%0.0
LPT31 (R)1ACh10.0%0.0
PS221 (R)1ACh10.0%0.0
AN07B037_a (L)1ACh10.0%0.0
DNg09_a (L)1ACh10.0%0.0
CB0164 (R)1Glu10.0%0.0
LPT31 (L)1ACh10.0%0.0
LAL166 (L)1ACh10.0%0.0
MeVP60 (R)1Glu10.0%0.0
LAL143 (L)1GABA10.0%0.0
PS239 (R)1ACh10.0%0.0
LAL195 (R)1ACh10.0%0.0
PS233 (R)1ACh10.0%0.0
DNg41 (L)1Glu10.0%0.0
FB4Y (L)15-HT10.0%0.0
PS060 (R)1GABA10.0%0.0
PLP018 (R)1GABA10.0%0.0
LAL111 (R)1GABA10.0%0.0
GNG163 (R)1ACh10.0%0.0
mALD4 (R)1GABA10.0%0.0
CB0466 (R)1GABA10.0%0.0
AN06B011 (L)1ACh10.0%0.0
SAD010 (R)1ACh10.0%0.0
CB0540 (R)1GABA10.0%0.0
LoVC15 (R)1GABA10.0%0.0
GNG660 (R)1GABA10.0%0.0
PS196_b (L)1ACh10.0%0.0
LT82b (R)1ACh10.0%0.0
CB0194 (R)1GABA10.0%0.0
HST (L)1ACh10.0%0.0
PS059 (R)1GABA10.0%0.0
OA-AL2i4 (R)1OA10.0%0.0
Nod4 (L)1ACh10.0%0.0
mALD1 (L)1GABA10.0%0.0
DNa02 (R)1ACh10.0%0.0
MeVPOL1 (R)1ACh10.0%0.0