Male CNS – Cell Type Explorer

Mi20(L)

2
Total Neurons
Right: 1 | Left: 1
log ratio : 0.00
3,967
Total Synapses
Post: 3,094 | Pre: 873
log ratio : -1.83
3,967
Mean Synapses
Post: 3,094 | Pre: 873
log ratio : -1.83
Glu(75.0% CL)
Neurotransmitter

Mean Synapse Count per Layer

 
Post
Pre
LA
-
-
ME 1ME 2ME 3ME 4ME 5ME 6ME 7ME 8ME 9ME 10Total
284461040036619458987153,089
1333302012251361682871
 
Post
Pre
LO 1LO 2LO 3LO 4LO 5ALO 5BLO 6Total
--------
--------
AME
-
-
 
Post
Pre
LOP 1LOP 2LOP 3LOP 4Total
-----
-----
central brain
-
-

Population spatial coverage

Neuron Visualization

Dark Light

Navigation

🖱️ Left Mouse Button (LMB) + Drag
Rotate the view.
Shift + 🖱️ LMB + Drag
Translate the view.
Ctrl + Mousewheel
Zoom in and out.
⌨️ z
Reset view to closest
⌨️ o
Toggle between orthographic and perspective projection.
⌨️ l
Reassign random colors to neurons and ROI meshes.

Filtering

screenshot of neuroglancer filter section
1
Use text to filter neurons by type name.

2
Use tags to require or exclude neurons of certain properties, e.g. `soma_side`.

3
Add / remove matched neurons from view.

4
Remove currently selected neurons from view.

5
Toggle individual neurons from view.
?

ROI Innervation (2 ROIs)

ROI Name
In
%
In
log
ratio

Out
%
Out
ME(L)3,08999.8%-1.8387199.8%
Optic-unspecified(L)50.2%-1.3220.2%

Connectivity

Inputs

upstream
partner
#NTconns
Mi20
%
In
CV
Tm3 (L)105ACh35111.7%0.8
L5 (L)97ACh2277.6%0.8
Dm13 (L)7GABA1916.4%1.0
Pm3 (L)12GABA1836.1%0.7
Cm2 (L)46ACh1775.9%0.8
Mi10 (L)40ACh1625.4%0.7
TmY10 (L)40ACh1525.1%0.7
Mi4 (L)77GABA1444.8%0.6
Tm4 (L)49ACh1304.3%0.7
Mi9 (L)64Glu1294.3%0.6
Tm1 (L)45ACh1053.5%0.6
TmY5a (L)62Glu882.9%0.5
Pm9 (L)11GABA752.5%0.8
MeLo8 (L)6GABA571.9%1.0
Pm2a (L)17GABA561.9%0.8
Tm5a (L)22ACh551.8%0.7
T2a (L)34ACh531.8%0.4
Mi1 (L)29ACh451.5%0.7
TmY9b (L)10ACh381.3%1.0
Dm8a (L)20Glu381.3%0.8
Cm31a (L)2GABA361.2%0.2
ME_unclear (L)3Glu341.1%1.2
Dm2 (L)17ACh270.9%0.5
Cm11d (L)4ACh240.8%0.5
Tm2 (L)14ACh240.8%0.8
Pm2b (L)10GABA210.7%0.6
TmY14 (L)15unc190.6%0.6
MeLo9 (L)6Glu180.6%1.5
Y3 (L)8ACh170.6%0.9
Tm20 (L)10ACh170.6%0.5
Mi18 (L)6GABA140.5%0.6
Pm8 (L)7GABA140.5%0.5
TmY3 (L)13ACh140.5%0.2
TmY21 (L)4ACh130.4%0.5
TmY18 (L)9ACh130.4%0.5
T2 (L)9ACh130.4%0.3
Dm10 (L)11GABA130.4%0.3
TmY15 (L)6GABA110.4%0.5
Cm11b (L)6ACh110.4%0.5
MeLo1 (L)6ACh90.3%0.3
T3 (L)3ACh80.3%0.5
Tm6 (L)6ACh80.3%0.4
Cm10 (L)5GABA70.2%0.3
L2 (L)1ACh60.2%0.0
Cm1 (L)4ACh60.2%0.6
Dm8b (L)4Glu60.2%0.6
MeVPMe1 (R)2Glu60.2%0.0
Dm20 (L)5Glu60.2%0.3
Tm38 (L)4ACh60.2%0.3
LC14b (R)5ACh60.2%0.3
Pm4 (L)2GABA50.2%0.6
Dm9 (L)3Glu50.2%0.6
Tm16 (L)3ACh50.2%0.6
Dm12 (L)3Glu50.2%0.3
Y11 (L)3Glu50.2%0.3
MeVP41 (L)1ACh40.1%0.0
Pm12 (L)2GABA40.1%0.5
MeLo12 (L)1Glu30.1%0.0
MeVC25 (L)1Glu30.1%0.0
Tm5b (L)2ACh30.1%0.3
TmY19a (L)2GABA30.1%0.3
Mi14 (L)3Glu30.1%0.0
Tm5c (L)3Glu30.1%0.0
Tm5Y (L)3ACh30.1%0.0
MeVP4 (L)3ACh30.1%0.0
MeLo10 (L)3Glu30.1%0.0
MeLo7 (L)1ACh20.1%0.0
MeLo14 (L)1Glu20.1%0.0
Cm19 (L)1GABA20.1%0.0
Mi16 (L)1GABA20.1%0.0
Tm33 (L)1ACh20.1%0.0
Tm40 (L)1ACh20.1%0.0
Cm21 (L)1GABA20.1%0.0
MeVC21 (L)1Glu20.1%0.0
Cm34 (L)1Glu20.1%0.0
Y13 (L)2Glu20.1%0.0
Pm1 (L)2GABA20.1%0.0
Pm5 (L)2GABA20.1%0.0
TmY16 (L)2Glu20.1%0.0
Pm7 (L)1GABA10.0%0.0
Cm3 (L)1GABA10.0%0.0
Tm29 (L)1Glu10.0%0.0
MeVP3 (L)1ACh10.0%0.0
DNc01 (R)1unc10.0%0.0
C3 (L)1GABA10.0%0.0
Mi2 (L)1Glu10.0%0.0
TmY_unclear (L)1ACh10.0%0.0
MeLo3a (L)1ACh10.0%0.0
Tm12 (L)1ACh10.0%0.0
MeLo4 (L)1ACh10.0%0.0
MeLo13 (L)1Glu10.0%0.0
TmY17 (L)1ACh10.0%0.0
Tm39 (L)1ACh10.0%0.0
Lawf1 (L)1ACh10.0%0.0
TmY4 (L)1ACh10.0%0.0
MeVP1 (L)1ACh10.0%0.0
Cm17 (L)1GABA10.0%0.0
Pm6 (L)1GABA10.0%0.0
Y12 (L)1Glu10.0%0.0
MeVPMe3 (R)1Glu10.0%0.0
MeVC6 (R)1ACh10.0%0.0
Pm13 (L)1Glu10.0%0.0
OLVC2 (R)1GABA10.0%0.0
MeVPMe12 (L)1ACh10.0%0.0
OA-AL2i2 (L)1OA10.0%0.0
Dm17 (L)1Glu10.0%0.0
MeVC1 (R)1ACh10.0%0.0

Outputs

downstream
partner
#NTconns
Mi20
%
Out
CV
TmY3 (L)83ACh53016.8%0.7
Tm2 (L)133ACh48815.5%0.7
Dm10 (L)50GABA2638.3%0.6
Tm1 (L)68ACh1715.4%0.6
Mi1 (L)83ACh1645.2%0.6
Mi4 (L)85GABA1474.7%0.5
Pm2a (L)21GABA1434.5%0.7
Dm13 (L)6GABA1284.1%0.9
Mi9 (L)71Glu1163.7%0.6
Tm4 (L)48ACh762.4%0.4
MeLo8 (L)7GABA722.3%0.9
TmY14 (L)30unc682.2%0.7
Mi14 (L)23Glu632.0%0.6
Dm12 (L)25Glu601.9%0.7
Pm12 (L)2GABA561.8%0.4
T2 (L)31ACh421.3%0.4
Pm4 (L)13GABA411.3%1.0
MeLo7 (L)13ACh381.2%1.0
MeLo3a (L)9ACh331.0%0.4
Tm3 (L)20ACh280.9%0.5
TmY18 (L)21ACh270.9%0.4
Mi18 (L)10GABA260.8%0.6
TmY5a (L)20Glu250.8%0.6
Pm3 (L)8GABA210.7%0.6
Mi10 (L)16ACh190.6%0.3
Tm38 (L)10ACh160.5%0.6
TmY21 (L)8ACh150.5%0.7
MeVP4 (L)6ACh140.4%0.9
Pm2b (L)8GABA140.4%0.6
TmY13 (L)11ACh140.4%0.3
L4 (L)9ACh130.4%0.3
T2a (L)12ACh130.4%0.3
MeLo9 (L)8Glu120.4%0.5
ME_unclear (L)2Glu100.3%0.6
Tm39 (L)6ACh90.3%0.7
MeVP17 (L)2Glu80.3%0.5
Lawf1 (L)6ACh80.3%0.6
Pm9 (L)5GABA80.3%0.5
Tm40 (L)6ACh80.3%0.4
Y3 (L)8ACh80.3%0.0
TmY10 (L)5ACh70.2%0.6
DNc01 (R)1unc60.2%0.0
MeLo1 (L)3ACh60.2%0.4
T3 (L)5ACh60.2%0.3
T1 (L)2HA50.2%0.2
LC14b (R)4ACh50.2%0.3
TmY16 (L)4Glu50.2%0.3
Y14 (L)5Glu50.2%0.0
Dm4 (L)1Glu40.1%0.0
MeVP10 (L)2ACh40.1%0.5
Dm2 (L)3ACh40.1%0.4
Tm16 (L)4ACh40.1%0.0
MeLo3b (L)1ACh30.1%0.0
MeVP23 (L)1Glu30.1%0.0
MeLo12 (L)2Glu30.1%0.3
Tm20 (L)3ACh30.1%0.0
MeVPMe1 (L)3Glu30.1%0.0
L2 (L)1ACh20.1%0.0
Lawf2 (L)1ACh20.1%0.0
Pm10 (L)1GABA20.1%0.0
MeVP26 (L)1Glu20.1%0.0
MeVP24 (L)1ACh20.1%0.0
Mi2 (L)2Glu20.1%0.0
Tm6 (L)2ACh20.1%0.0
C3 (L)2GABA20.1%0.0
Pm5 (L)2GABA20.1%0.0
Tm26 (L)2ACh20.1%0.0
Tm12 (L)2ACh20.1%0.0
Cm2 (L)2ACh20.1%0.0
Tm5Y (L)2ACh20.1%0.0
Tm9 (L)2ACh20.1%0.0
Tm5b (L)2ACh20.1%0.0
Tm5c (L)2Glu20.1%0.0
TmY17 (L)2ACh20.1%0.0
TmY19a (L)2GABA20.1%0.0
Pm6 (L)2GABA20.1%0.0
MeVPMe2 (R)2Glu20.1%0.0
Tm33 (L)1ACh10.0%0.0
L1 (L)1Glu10.0%0.0
TmY15 (L)1GABA10.0%0.0
Tm37 (L)1Glu10.0%0.0
L5 (L)1ACh10.0%0.0
Mi13 (L)1Glu10.0%0.0
Mi16 (L)1GABA10.0%0.0
LOP_ME_unclear (L)1Glu10.0%0.0
Pm1 (L)1GABA10.0%0.0
Tm32 (L)1Glu10.0%0.0
MeVP11 (L)1ACh10.0%0.0
Pm8 (L)1GABA10.0%0.0
MeLo10 (L)1Glu10.0%0.0
MeVPLo1 (L)1Glu10.0%0.0
Mi19 (L)1unc10.0%0.0
Cm31a (L)1GABA10.0%0.0
Pm11 (L)1GABA10.0%0.0
MeVPMe12 (L)1ACh10.0%0.0
MeVPMe2 (L)1Glu10.0%0.0
MeVC25 (L)1Glu10.0%0.0
5-HTPMPV03 (R)15-HT10.0%0.0