Male CNS – Cell Type Explorer

LT54(R)

2
Total Neurons
Right: 1 | Left: 1
log ratio : 0.00
2,112
Total Synapses
Post: 1,087 | Pre: 1,025
log ratio : -0.08
2,112
Mean Synapses
Post: 1,087 | Pre: 1,025
log ratio : -0.08
Glu(74.8% CL)
Neurotransmitter

Mean Synapse Count per Layer

 
Post
Pre
LA
-
-
ME 1ME 2ME 3ME 4ME 5ME 6ME 7ME 8ME 9ME 10Total
-----------
-----------
 
Post
Pre
LO 1LO 2LO 3LO 4LO 5ALO 5BLO 6Total
---3058137692917
------33
AME
-
-
 
Post
Pre
LOP 1LOP 2LOP 3LOP 4Total
-----
-----
central brain
38
13

Population spatial coverage

Neuron Visualization

Dark Light

Navigation

🖱️ Left Mouse Button (LMB) + Drag
Rotate the view.
Shift + 🖱️ LMB + Drag
Translate the view.
Ctrl + Mousewheel
Zoom in and out.
⌨️ z
Reset view to closest
⌨️ o
Toggle between orthographic and perspective projection.
⌨️ l
Reassign random colors to neurons and ROI meshes.

Filtering

screenshot of neuroglancer filter section
1
Use text to filter neurons by type name.

2
Use tags to require or exclude neurons of certain properties, e.g. `soma_side`.

3
Add / remove matched neurons from view.

4
Remove currently selected neurons from view.

5
Toggle individual neurons from view.
?

ROI Innervation (10 ROIs)

ROI Name
In
%
In
log
ratio

Out
%
Out
LO(R)91784.4%-8.2630.3%
Optic-unspecified(L)494.5%3.5256455.0%
LO(L)645.9%2.7844042.9%
CentralBrain-unspecified191.7%-0.79111.1%
Optic-unspecified(R)191.7%-1.9350.5%
AOTU(L)131.2%-inf00.0%
AOTU(R)30.3%-inf00.0%
SIP(L)10.1%0.0010.1%
SIP(R)10.1%0.0010.1%
SMP(R)10.1%-inf00.0%

Connectivity

Inputs

upstream
partner
#NTconns
LT54
%
In
CV
TmY9b (R)73ACh35934.0%0.6
LT54 (L)1Glu14213.4%0.0
Tm4 (R)10ACh373.5%0.8
LoVP13 (R)15Glu333.1%0.8
Tm16 (R)19ACh292.7%0.5
Li21 (L)17ACh282.6%0.4
LT37 (R)1GABA272.6%0.0
LC14a-2 (L)4ACh232.2%0.9
LC40 (R)7ACh232.2%0.6
Li14 (R)16Glu181.7%0.4
Tm38 (R)11ACh171.6%0.5
TmY10 (R)10ACh151.4%0.4
LoVC22 (L)2DA121.1%0.3
Tm34 (L)7Glu121.1%0.4
TmY17 (R)10ACh121.1%0.3
Li35 (R)7GABA111.0%0.7
TmY5a (R)7Glu90.9%0.4
LT52 (R)6Glu90.9%0.3
Li21 (R)7ACh80.8%0.3
LoVP16 (R)1ACh70.7%0.0
LoVC22 (R)2DA70.7%0.4
Y11 (R)5Glu70.7%0.6
LoVCLo3 (R)1OA60.6%0.0
LoVC18 (R)2DA60.6%0.7
LoVP6 (R)2ACh60.6%0.3
MeLo7 (L)4ACh60.6%0.6
LC24 (R)2ACh50.5%0.2
LC14a-1 (L)2ACh50.5%0.2
Li23 (R)3ACh50.5%0.3
Y3 (R)4ACh50.5%0.3
LC4 (R)2ACh40.4%0.5
LC10e (L)3ACh40.4%0.4
Tm34 (R)3Glu40.4%0.4
Li22 (R)3GABA40.4%0.4
LC10a (L)3ACh40.4%0.4
LC27 (R)4ACh40.4%0.0
LT63 (R)1ACh30.3%0.0
LoVP47 (R)1Glu30.3%0.0
Li39 (R)1GABA30.3%0.0
Li33 (R)1ACh30.3%0.0
5-HTPMPV03 (L)15-HT30.3%0.0
Li39 (L)1GABA30.3%0.0
LC46b (L)2ACh30.3%0.3
TmY20 (R)2ACh30.3%0.3
TmY9a (R)2ACh30.3%0.3
LC6 (R)2ACh30.3%0.3
Li27 (R)3GABA30.3%0.0
LC20a (R)3ACh30.3%0.0
LC20b (R)3Glu30.3%0.0
Tm38 (L)3ACh30.3%0.0
LC10d (L)1ACh20.2%0.0
LC20a (L)1ACh20.2%0.0
Tm31 (L)1GABA20.2%0.0
LoVP_unclear (L)1ACh20.2%0.0
TuTuA_2 (L)1Glu20.2%0.0
Tm40 (R)1ACh20.2%0.0
LC10d (R)1ACh20.2%0.0
LoVP83 (R)1ACh20.2%0.0
LC13 (R)1ACh20.2%0.0
LC19 (R)1ACh20.2%0.0
LT72 (R)1ACh20.2%0.0
LPT51 (L)1Glu20.2%0.0
Li12 (R)1Glu20.2%0.0
LoVCLo2 (R)1unc20.2%0.0
LoVCLo2 (L)1unc20.2%0.0
LoVC1 (L)1Glu20.2%0.0
LoVCLo3 (L)1OA20.2%0.0
LT36 (R)1GABA20.2%0.0
LoVC6 (R)1GABA20.2%0.0
Li14 (L)2Glu20.2%0.0
LC40 (L)2ACh20.2%0.0
Li18b (R)2GABA20.2%0.0
Tm31 (R)2GABA20.2%0.0
Y12 (R)2Glu20.2%0.0
MeLo1 (R)2ACh20.2%0.0
Li13 (R)2GABA20.2%0.0
LC14a-1 (R)2ACh20.2%0.0
Tm37 (L)1Glu10.1%0.0
DNp27 (L)1ACh10.1%0.0
CRE040 (L)1GABA10.1%0.0
LoVP14 (L)1ACh10.1%0.0
SMP155 (R)1GABA10.1%0.0
LT78 (L)1Glu10.1%0.0
LT59 (L)1ACh10.1%0.0
LC35a (L)1ACh10.1%0.0
LoVP27 (L)1ACh10.1%0.0
Li23 (L)1ACh10.1%0.0
P1_12a (L)1ACh10.1%0.0
TmY17 (L)1ACh10.1%0.0
LoVP43 (L)1ACh10.1%0.0
LC27 (L)1ACh10.1%0.0
LC10b (L)1ACh10.1%0.0
Tm33 (R)1ACh10.1%0.0
LoVP7 (R)1Glu10.1%0.0
Li20 (R)1Glu10.1%0.0
LC4 (L)1ACh10.1%0.0
Tm37 (R)1Glu10.1%0.0
LC46b (R)1ACh10.1%0.0
Li18a (L)1GABA10.1%0.0
Tm5c (R)1Glu10.1%0.0
Tm5Y (R)1ACh10.1%0.0
LC16 (L)1ACh10.1%0.0
Tm36 (L)1ACh10.1%0.0
Tm36 (R)1ACh10.1%0.0
LoVP14 (R)1ACh10.1%0.0
LoVP75 (R)1ACh10.1%0.0
Li34a (R)1GABA10.1%0.0
AOTU051 (R)1GABA10.1%0.0
Tlp11 (R)1Glu10.1%0.0
LC36 (R)1ACh10.1%0.0
LC37 (R)1Glu10.1%0.0
LC14a-2 (R)1ACh10.1%0.0
LOLP1 (R)1GABA10.1%0.0
LoVP34 (R)1ACh10.1%0.0
LoVP18 (R)1ACh10.1%0.0
LT59 (R)1ACh10.1%0.0
Li33 (L)1ACh10.1%0.0
LoVP40 (R)1Glu10.1%0.0
LPT51 (R)1Glu10.1%0.0
aMe30 (R)1Glu10.1%0.0
LT84 (R)1ACh10.1%0.0
LoVC19 (R)1ACh10.1%0.0
AOTU064 (L)1GABA10.1%0.0
LT51 (R)1Glu10.1%0.0
DNp27 (R)1ACh10.1%0.0

Outputs

downstream
partner
#NTconns
LT54
%
Out
CV
LT46 (R)1GABA2138.7%0.0
Li22 (L)52GABA2028.2%0.6
Li23 (L)28ACh1947.9%0.6
LC46b (L)5ACh1787.2%0.3
LT54 (L)1Glu1596.5%0.0
LT59 (L)1ACh1365.5%0.0
Li21 (L)39ACh1325.4%0.7
LC19 (L)5ACh1104.5%0.8
LC27 (L)12ACh973.9%0.9
LT75 (L)1ACh712.9%0.0
Li36 (L)1Glu682.8%0.0
LC10e (L)11ACh672.7%0.5
LC33 (L)2Glu652.6%0.8
LT52 (L)7Glu562.3%1.0
Li26 (L)11GABA502.0%0.6
LC14b (L)8ACh451.8%0.9
LT37 (L)1GABA361.5%0.0
LoVP27 (L)2ACh321.3%0.9
LC10b (L)7ACh291.2%0.6
LPLC4 (L)7ACh281.1%0.3
Li14 (L)12Glu251.0%0.5
Tm16 (L)10ACh200.8%0.6
Li27 (L)10GABA200.8%0.5
LC14a-2 (L)4ACh180.7%0.4
LC10d (L)11ACh180.7%0.6
TmY17 (L)10ACh170.7%0.5
Li17 (L)5GABA150.6%0.7
Tm34 (L)7Glu120.5%0.4
LoVP90b (L)1ACh110.4%0.0
Li18b (L)5GABA110.4%0.7
LoVP40 (L)1Glu100.4%0.0
LoVP98 (L)1ACh100.4%0.0
LO_unclear (L)3Glu100.4%0.3
LC40 (L)6ACh100.4%0.7
MeLo7 (L)4ACh90.4%0.6
LC37 (L)3Glu80.3%0.6
Li13 (L)5GABA80.3%0.8
LC20a (L)5ACh80.3%0.3
LT55 (L)1Glu70.3%0.0
Li32 (L)1GABA70.3%0.0
Li39 (R)1GABA70.3%0.0
LC9 (L)2ACh70.3%0.7
LC15 (L)2ACh70.3%0.7
Li35 (L)5GABA70.3%0.3
Li25 (L)5GABA70.3%0.3
LoVP49 (L)1ACh60.2%0.0
LoVP2 (L)2Glu60.2%0.3
LT51 (L)3Glu60.2%0.4
MeTu1 (L)3ACh60.2%0.0
LPT51 (L)2Glu50.2%0.6
LPLC1 (L)2ACh50.2%0.6
LoVP11 (L)2ACh50.2%0.2
Li18a (L)4GABA50.2%0.3
LoVP75 (L)1ACh40.2%0.0
LC36 (L)1ACh40.2%0.0
Li33 (L)1ACh40.2%0.0
LT88 (L)1Glu40.2%0.0
LoVP109 (L)1ACh40.2%0.0
LoVC2 (L)1GABA40.2%0.0
LC14b (R)2ACh40.2%0.5
LOLP1 (L)2GABA40.2%0.0
LC24 (L)3ACh40.2%0.4
LC14a-1 (L)3ACh40.2%0.4
LoVP16 (L)2ACh40.2%0.0
TmY10 (L)4ACh40.2%0.0
LoVP43 (L)1ACh30.1%0.0
LoVP19 (L)1ACh30.1%0.0
LC17 (R)1ACh30.1%0.0
LoVC19 (L)1ACh30.1%0.0
LT51 (R)1Glu30.1%0.0
LoVP90a (L)1ACh30.1%0.0
LoVC22 (R)1DA30.1%0.0
LC30 (L)2Glu30.1%0.3
LoVP14 (L)2ACh30.1%0.3
LC4 (R)2ACh30.1%0.3
LC20b (L)3Glu30.1%0.0
LC10a (L)3ACh30.1%0.0
T2a (L)1ACh20.1%0.0
LoVP4 (L)1ACh20.1%0.0
LC25 (L)1Glu20.1%0.0
Tm33 (L)1ACh20.1%0.0
LC6 (L)1ACh20.1%0.0
LC10c-1 (L)1ACh20.1%0.0
LoVP107 (L)1ACh20.1%0.0
LoVP100 (L)1ACh20.1%0.0
LoVCLo2 (L)1unc20.1%0.0
LoVC18 (L)1DA20.1%0.0
LoVP7 (L)2Glu20.1%0.0
LC13 (L)2ACh20.1%0.0
MeLo3a (L)2ACh20.1%0.0
MeTu4f (L)2ACh20.1%0.0
LC43 (L)2ACh20.1%0.0
LC26 (L)2ACh20.1%0.0
Li14 (R)2Glu20.1%0.0
LPLC2 (R)2ACh20.1%0.0
LC14a-1 (R)2ACh20.1%0.0
TmY9a (L)1ACh10.0%0.0
MeVC23 (L)1Glu10.0%0.0
LT70 (L)1GABA10.0%0.0
MeTu3c (L)1ACh10.0%0.0
P1_6b (L)1ACh10.0%0.0
LoVP10 (L)1ACh10.0%0.0
MeLo2 (L)1ACh10.0%0.0
LC10c-2 (L)1ACh10.0%0.0
LC16 (L)1ACh10.0%0.0
LT76 (L)1ACh10.0%0.0
TmY9b (L)1ACh10.0%0.0
TmY20 (R)1ACh10.0%0.0
TmY9b (R)1ACh10.0%0.0
LC12 (L)1ACh10.0%0.0
LC44 (L)1ACh10.0%0.0
Li34a (L)1GABA10.0%0.0
Tm24 (R)1ACh10.0%0.0
MeLo4 (L)1ACh10.0%0.0
Tm5c (L)1Glu10.0%0.0
Tm38 (L)1ACh10.0%0.0
Li13 (R)1GABA10.0%0.0
MeLo12 (L)1Glu10.0%0.0
LC14a-2 (R)1ACh10.0%0.0
LoVP39 (L)1ACh10.0%0.0
SMP148 (L)1GABA10.0%0.0
LT72 (L)1ACh10.0%0.0
SIP126m_b (R)1ACh10.0%0.0
MeVC21 (L)1Glu10.0%0.0
LT58 (L)1Glu10.0%0.0
LT42 (R)1GABA10.0%0.0
LoVP101 (L)1ACh10.0%0.0
LoVCLo3 (L)1OA10.0%0.0
LT36 (R)1GABA10.0%0.0