Male CNS – Cell Type Explorer

LOP_unclear(R)

4
Total Neurons
Right: 2 | Left: 2
log ratio : 0.00
1,075
Total Synapses
Post: 953 | Pre: 122
log ratio : -2.97
537.5
Mean Synapses
Post: 476.5 | Pre: 61
log ratio : -2.97
Glu(60.2% CL)
Neurotransmitter

Mean Synapse Count per Layer

 
Post
Pre
LA
-
-
ME 1ME 2ME 3ME 4ME 5ME 6ME 7ME 8ME 9ME 10Total
-----------
-----------
 
Post
Pre
LO 1LO 2LO 3LO 4LO 5ALO 5BLO 6Total
7.513.5-726--54
-0.5--9--9.5
AME
-
-
 
Post
Pre
LOP 1LOP 2LOP 3LOP 4Total
75192.5122.543433
12.526.55.5347.5
central brain
5
16

Population spatial coverage

Neuron Visualization

Dark Light

Navigation

🖱️ Left Mouse Button (LMB) + Drag
Rotate the view.
Shift + 🖱️ LMB + Drag
Translate the view.
Ctrl + Mousewheel
Zoom in and out.
⌨️ z
Reset view to closest
⌨️ o
Toggle between orthographic and perspective projection.
⌨️ l
Reassign random colors to neurons and ROI meshes.

Filtering

screenshot of neuroglancer filter section
1
Use text to filter neurons by type name.

2
Use tags to require or exclude neurons of certain properties, e.g. `soma_side`.

3
Add / remove matched neurons from view.

4
Remove currently selected neurons from view.

5
Toggle individual neurons from view.
?

ROI Innervation (5 ROIs)

ROI Name
In
%
In
log
ratio

Out
%
Out
LOP(R)86690.9%-3.199577.9%
LO(R)757.9%-2.91108.2%
PLP(R)30.3%1.5897.4%
CentralBrain-unspecified20.2%1.8175.7%
Optic-unspecified(R)70.7%-2.8110.8%

Connectivity

Inputs

upstream
partner
#NTconns
LOP_unclear
%
In
CV
T4c (R)46ACh13228.1%0.7
T5c (R)56ACh108.523.1%0.8
LPi43 (R)4Glu25.55.4%0.8
T4a (R)11ACh204.3%0.7
Tlp14 (R)4Glu18.53.9%0.4
TmY15 (R)14GABA15.53.3%0.7
Y3 (R)11ACh132.8%0.6
LOLP1 (R)7GABA122.6%0.6
TmY3 (R)10ACh112.3%0.4
Tm4 (R)6ACh10.52.2%0.8
T5a (R)10ACh9.52.0%0.8
TmY9b (R)5ACh71.5%0.5
T4b (R)3ACh6.51.4%0.1
LPi3a (R)4Glu61.3%0.5
Y11 (R)5Glu5.51.2%0.5
TmY16 (R)2Glu51.1%0.4
Tlp13 (R)5Glu4.51.0%0.4
LPi3412 (R)3Glu40.9%0.5
TmY5a (R)6Glu40.9%0.4
LPi2e (R)1Glu3.50.7%0.0
LPT54 (R)1ACh30.6%0.0
LPi2c (R)3Glu30.6%0.4
TmY17 (R)3ACh30.6%0.0
TmY10 (R)2ACh2.50.5%0.6
T5b (R)3ACh2.50.5%0.3
Tm23 (R)2GABA2.50.5%0.2
Tm3 (R)3ACh20.4%0.4
Tm1 (R)2ACh20.4%0.0
TmY20 (R)3ACh20.4%0.4
LLPC2 (R)4ACh20.4%0.0
Tm2 (R)1ACh1.50.3%0.0
Y13 (R)1Glu1.50.3%0.0
Tm5Y (R)2ACh1.50.3%0.3
Tm37 (R)2Glu1.50.3%0.3
LC14b (L)2ACh1.50.3%0.3
T4d (R)1ACh10.2%0.0
Li14 (R)1Glu10.2%0.0
Tlp12 (R)1Glu10.2%0.0
Li21 (R)1ACh10.2%0.0
LPC2 (R)2ACh10.2%0.0
LLPC3 (R)2ACh10.2%0.0
TmY13 (R)2ACh10.2%0.0
LPT23 (R)1ACh0.50.1%0.0
TmY18 (R)1ACh0.50.1%0.0
TmY4 (R)1ACh0.50.1%0.0
T2 (R)1ACh0.50.1%0.0
LPLC2 (R)1ACh0.50.1%0.0
LOP_LO_unclear (R)1Glu0.50.1%0.0
PLP025 (R)1GABA0.50.1%0.0
Li26 (R)1GABA0.50.1%0.0
LPLC1 (R)1ACh0.50.1%0.0
MeLo14 (R)1Glu0.50.1%0.0
MeVPLp2 (L)1Glu0.50.1%0.0
T5d (R)1ACh0.50.1%0.0
Y14 (R)1Glu0.50.1%0.0
Y12 (R)1Glu0.50.1%0.0
TmY21 (R)1ACh0.50.1%0.0
TmY19a (R)1GABA0.50.1%0.0
TmY19b (R)1GABA0.50.1%0.0
LPi4b (R)1GABA0.50.1%0.0

Outputs

downstream
partner
#NTconns
LOP_unclear
%
Out
CV
Y3 (R)10ACh23.511.0%0.6
TmY17 (R)8ACh219.8%0.7
TmY4 (R)12ACh16.57.7%0.6
Y11 (R)6Glu136.1%0.7
LLPC2 (R)11ACh115.1%0.6
Tlp13 (R)7Glu104.7%0.5
TmY20 (R)5ACh94.2%0.5
TmY13 (R)5ACh8.54.0%0.5
TmY14 (R)6unc8.54.0%0.7
Tm5Y (R)10ACh7.53.5%0.4
Y13 (R)7Glu73.3%0.5
LPC2 (R)7ACh52.3%0.3
LPLC_unclear (R)1ACh41.9%0.0
LPi3412 (R)2Glu41.9%0.2
TmY16 (R)2Glu41.9%0.0
TmY10 (R)3ACh41.9%0.2
LOP_LO_unclear (R)1Glu31.4%0.0
LLPC1 (R)3ACh31.4%0.4
LOLP1 (R)3GABA31.4%0.0
DNp31 (R)1ACh2.51.2%0.0
Am1 (R)1GABA2.51.2%0.0
Tlp14 (R)3Glu2.51.2%0.3
PLP037 (R)1Glu20.9%0.0
Nod2 (R)1GABA20.9%0.0
Tlp12 (R)1Glu20.9%0.0
TmY15 (R)4GABA20.9%0.0
TmY19a (R)4GABA20.9%0.0
Tm16 (R)1ACh1.50.7%0.0
Tm39 (R)1ACh1.50.7%0.0
Tm38 (R)1ACh1.50.7%0.0
LPi2c (R)2Glu1.50.7%0.3
Nod4 (R)1ACh1.50.7%0.0
LPi3a (R)2Glu1.50.7%0.3
TmY9b (R)2ACh1.50.7%0.3
TmY5a (R)3Glu1.50.7%0.0
LPT23 (R)1ACh10.5%0.0
PLP248 (R)1Glu10.5%0.0
LPT53 (R)1GABA10.5%0.0
Y14 (R)1Glu10.5%0.0
LPT111 (R)2GABA10.5%0.0
Tm37 (R)2Glu10.5%0.0
TmY21 (R)2ACh10.5%0.0
LPLC2 (R)2ACh10.5%0.0
LPLC4 (R)2ACh10.5%0.0
T4c (R)2ACh10.5%0.0
LPT100 (R)1ACh0.50.2%0.0
LPC_unclear (R)1ACh0.50.2%0.0
TmY9a (R)1ACh0.50.2%0.0
LPC1 (R)1ACh0.50.2%0.0
LLPC3 (R)1ACh0.50.2%0.0
PLP101 (R)1ACh0.50.2%0.0
Li14 (R)1Glu0.50.2%0.0
PLP025 (R)1GABA0.50.2%0.0
LoVP86 (R)1ACh0.50.2%0.0
VS (R)1ACh0.50.2%0.0
Nod1 (R)1ACh0.50.2%0.0
LPT50 (R)1GABA0.50.2%0.0
dCal1 (R)1GABA0.50.2%0.0
LoVC6 (R)1GABA0.50.2%0.0
H2 (R)1ACh0.50.2%0.0
T5a (R)1ACh0.50.2%0.0
T4a (R)1ACh0.50.2%0.0
LC4 (R)1ACh0.50.2%0.0