Male CNS – Cell Type Explorer

L2(R)

1779
Total Neurons
Right: 893 | Left: 886
log ratio : -0.01
451,265
Total Synapses
Post: 297,200 | Pre: 154,065
log ratio : -0.95
505.3
Mean Synapses
Post: 332.8 | Pre: 172.5
log ratio : -0.95
ACh(95.0% CL)
Neurotransmitter

Mean Synapse Count per Layer

 
Post
Pre
LA
166.8
14.0
ME 1ME 2ME 3ME 4ME 5ME 6ME 7ME 8ME 9ME 10Total
79.193.017.6-------189.7
36.9116.512.5-------165.9
 
Post
Pre
LO 1LO 2LO 3LO 4LO 5ALO 5BLO 6Total
--------
--------
AME
-
-
 
Post
Pre
LOP 1LOP 2LOP 3LOP 4Total
-----
-----
central brain
-
-

Population spatial coverage

Neuron Visualization

Dark Light

Navigation

🖱️ Left Mouse Button (LMB) + Drag
Rotate the view.
Shift + 🖱️ LMB + Drag
Translate the view.
Ctrl + Mousewheel
Zoom in and out.
⌨️ z
Reset view to closest
⌨️ o
Toggle between orthographic and perspective projection.
⌨️ l
Reassign random colors to neurons and ROI meshes.

Filtering

screenshot of neuroglancer filter section
1
Use text to filter neurons by type name.

2
Use tags to require or exclude neurons of certain properties, e.g. `soma_side`.

3
Add / remove matched neurons from view.

4
Remove currently selected neurons from view.

5
Toggle individual neurons from view.
?

ROI Innervation (3 ROIs)

ROI Name
In
%
In
log
ratio

Out
%
Out
ME(R)161,93154.5%-0.18143,01692.8%
LA(R)126,62342.6%-3.5810,5896.9%
Optic-unspecified(R)8,5572.9%-4.244540.3%

Connectivity

Inputs

upstream
partner
#NTconns
L2
%
In
CV
R1-R62140HA76.627.0%0.4
C3 (R)892GABA69.624.5%0.2
Dm15 (R)242Glu22.88.0%0.3
Dm6 (R)29Glu22.27.8%0.3
C2 (R)874GABA21.57.6%0.4
Dm1 (R)39Glu20.27.1%0.3
L4 (R)806ACh13.34.7%0.5
Dm17 (R)4Glu10.83.8%0.1
L5 (R)886ACh7.02.5%0.5
Dm19 (R)15Glu5.21.8%0.2
Tm2 (R)650ACh1.60.6%0.7
Tm1 (R)672ACh1.60.6%0.6
Mi4 (R)615GABA1.30.5%0.6
L1 (R)453Glu1.30.5%0.8
Dm14 (R)16Glu1.30.5%0.4
Lawf1 (R)48ACh1.00.4%0.7
Lai (R)46Glu1.00.3%0.8
Dm16 (R)74Glu0.80.3%0.5
Dm9 (R)128Glu0.70.2%0.9
Mi14 (R)139Glu0.50.2%0.6
R1-R6 (R)9HA0.50.2%0.5
T1 (R)226HA0.40.1%0.9
Mi13 (R)114Glu0.20.1%0.6
Tm4 (R)83ACh0.20.1%1.3
L3 (R)103ACh0.20.1%0.8
R8_unclear94HA0.20.1%0.6
Dm20 (R)35Glu0.20.1%0.8
Dm18 (R)13GABA0.20.1%1.6
Lawf2 (R)38ACh0.10.0%0.8
Mi1 (R)75ACh0.10.0%0.8
R8p62HA0.10.0%0.8
R8y73HA0.10.0%0.5
Mi9 (R)62Glu0.10.0%0.3
Tm20 (R)39ACh0.10.0%1.1
Mi2 (R)38Glu0.10.0%0.6
OA-AL2i3 (R)2OA0.10.0%0.2
MeLo1 (R)32ACh0.10.0%0.6
R7_unclear36HA0.10.0%0.6
T2 (R)16ACh0.10.0%1.6
MeVC23 (R)1Glu0.00.0%0.0
Mi19 (R)5unc0.00.0%0.8
R7y25HA0.00.0%0.6
MeLo2 (R)19ACh0.00.0%1.2
TmY3 (R)30ACh0.00.0%0.2
R7d16HA0.00.0%0.9
Tm6 (R)14ACh0.00.0%1.2
Tm3 (R)17ACh0.00.0%1.1
L2 (R)17ACh0.00.0%0.8
MeVC1 (L)1ACh0.00.0%0.0
R7p16HA0.00.0%0.3
R8d14HA0.00.0%0.8
Mi15 (R)12ACh0.00.0%0.4
Dm11 (R)11Glu0.00.0%0.0
Tm12 (R)3ACh0.00.0%0.8
Mi18 (R)3GABA0.00.0%0.4
Dm3b (R)5Glu0.00.0%0.3
Tm5Y (R)2ACh0.00.0%0.5
DNc02 (L)1unc0.00.0%0.0
TmY9b (R)3ACh0.00.0%0.4
TmY10 (R)4ACh0.00.0%0.0
T2a (R)1ACh0.00.0%0.0
l-LNv (L)2unc0.00.0%0.3
Tm5c (R)3Glu0.00.0%0.0
TmY5a (R)3Glu0.00.0%0.0
Cm35 (R)1GABA0.00.0%0.0
Tm9 (R)2ACh0.00.0%0.0
Tm37 (R)2Glu0.00.0%0.0
aMe30 (R)1Glu0.00.0%0.0
MeVCMe1 (R)2ACh0.00.0%0.0
MeVCMe1 (L)2ACh0.00.0%0.0
Mi10 (R)2ACh0.00.0%0.0
Dm3a (R)2Glu0.00.0%0.0
Pm10 (R)1GABA0.00.0%0.0
LPT54 (R)1ACh0.00.0%0.0
Cm2 (R)1ACh0.00.0%0.0
MeVP51 (R)1Glu0.00.0%0.0
Tm29 (R)1Glu0.00.0%0.0
Dm3c (R)1Glu0.00.0%0.0

Outputs

downstream
partner
#NTconns
L2
%
Out
CV
Tm2 (R)883ACh129.317.2%0.2
Tm1 (R)890ACh123.316.4%0.2
Tm4 (R)833ACh109.314.5%0.2
T1 (R)892HA93.512.4%0.3
Dm6 (R)29Glu77.410.3%0.3
Dm19 (R)15Glu53.87.1%0.1
L5 (R)897ACh51.16.8%0.3
Dm15 (R)242Glu37.35.0%0.3
Dm17 (R)4Glu16.62.2%0.1
L4 (R)824ACh15.12.0%0.6
Tm20 (R)856ACh10.21.4%0.6
TmY3 (R)405ACh9.21.2%0.6
R1-R61669HA4.80.6%0.7
C3 (R)868GABA4.10.5%0.6
MeLo2 (R)71ACh3.20.4%0.5
Mi4 (R)752GABA2.30.3%0.7
L1 (R)601Glu2.10.3%0.7
Mi1 (R)515ACh1.20.2%0.8
T2 (R)458ACh1.00.1%0.7
Tm12 (R)344ACh1.00.1%0.7
L3 (R)329ACh0.80.1%0.8
Mi9 (R)355Glu0.70.1%0.7
Dm16 (R)72Glu0.70.1%0.7
Tm3 (R)236ACh0.50.1%0.8
Dm1 (R)39Glu0.50.1%0.5
Dm20 (R)45Glu0.50.1%1.0
Dm14 (R)16Glu0.30.0%0.4
T2a (R)152ACh0.20.0%0.6
C2 (R)166GABA0.20.0%0.4
Mi14 (R)87Glu0.20.0%1.2
Dm9 (R)85Glu0.20.0%1.1
Tm9 (R)77ACh0.10.0%0.8
Tm6 (R)59ACh0.10.0%0.9
TmY10 (R)59ACh0.10.0%0.6
Mi13 (R)71Glu0.10.0%1.0
Lai (R)29Glu0.10.0%0.8
Dm18 (R)13GABA0.10.0%1.0
MeLo1 (R)27ACh0.10.0%0.9
Lawf1 (R)32ACh0.00.0%0.5
R1-R6 (R)8HA0.00.0%0.9
Lawf2 (R)19ACh0.00.0%1.1
Mi18 (R)14GABA0.00.0%0.7
Tm5c (R)21Glu0.00.0%0.7
L2 (R)17ACh0.00.0%0.6
Mi2 (R)24Glu0.00.0%0.3
MeVP51 (R)1Glu0.00.0%0.0
Dm3b (R)13Glu0.00.0%0.8
Dm3a (R)15Glu0.00.0%0.7
Tm31 (R)13GABA0.00.0%0.5
TmY5a (R)15Glu0.00.0%0.6
R8_unclear15HA0.00.0%0.3
OA-AL2i3 (R)2OA0.00.0%0.9
Dm11 (R)10Glu0.00.0%0.4
MeVC23 (R)1Glu0.00.0%0.0
Mi15 (R)12ACh0.00.0%0.0
Dm3c (R)5Glu0.00.0%1.0
R8y9HA0.00.0%0.3
MeVC1 (L)1ACh0.00.0%0.0
TmY9a (R)5ACh0.00.0%0.6
R7y8HA0.00.0%0.3
Tm16 (R)5ACh0.00.0%0.5
R8p5HA0.00.0%0.3
TmY9b (R)6ACh0.00.0%0.0
R7_unclear4HA0.00.0%0.3
TmY18 (R)4ACh0.00.0%0.3
R7p2HA0.00.0%0.5
Dm12 (R)2Glu0.00.0%0.5
Dm2 (R)3ACh0.00.0%0.4
Dm10 (R)4GABA0.00.0%0.0
TmY4 (R)4ACh0.00.0%0.0
R8d2HA0.00.0%0.3
Mi19 (R)1unc0.00.0%0.0
Mi10 (R)3ACh0.00.0%0.0
Cm35 (R)1GABA0.00.0%0.0
aMe12 (R)1ACh0.00.0%0.0
TmY17 (R)2ACh0.00.0%0.0
Tm5Y (R)2ACh0.00.0%0.0
aMe17e (R)1Glu0.00.0%0.0
R7d2HA0.00.0%0.0
Pm4 (R)2GABA0.00.0%0.0
LPT54 (R)1ACh0.00.0%0.0
Tm26 (R)1ACh0.00.0%0.0
aMe5 (R)1ACh0.00.0%0.0
TmY13 (R)1ACh0.00.0%0.0
Tm38 (R)1ACh0.00.0%0.0
TmY16 (R)1Glu0.00.0%0.0
R7R8_unclear1HA0.00.0%0.0
Tm29 (R)1Glu0.00.0%0.0
Tm5b (R)1ACh0.00.0%0.0
Cm2 (R)1ACh0.00.0%0.0
aMe4 (R)1ACh0.00.0%0.0
Tm24 (R)1ACh0.00.0%0.0
Tm37 (R)1Glu0.00.0%0.0
MeTu2a (R)1ACh0.00.0%0.0