Male CNS – Cell Type Explorer

ITP

7
Total Neurons
Right: 4 | Left: 3
log ratio : -0.42
117
Total Synapses
Right: 87 | Left: 30
log ratio : -1.54
16.7
Mean Synapses
Right: 21.8 | Left: 10
log ratio : -1.12
unc(31.9% CL)
Neurotransmitter

Neuron Visualization

Dark Light

Navigation

🖱️ Left Mouse Button (LMB) + Drag
Rotate the view.
Shift + 🖱️ LMB + Drag
Translate the view.
Ctrl + Mousewheel
Zoom in and out.
⌨️ z
Reset view to closest
⌨️ o
Toggle between orthographic and perspective projection.
⌨️ l
Reassign random colors to neurons and ROI meshes.

Filtering

screenshot of neuroglancer filter section
1
Use text to filter neurons by type name.

2
Use tags to require or exclude neurons of certain properties, e.g. `soma_side`.

3
Add / remove matched neurons from view.

4
Remove currently selected neurons from view.

5
Toggle individual neurons from view.
?

ROI Innervation (3 ROIs)

ROI Name
In
%
In
log
ratio

Out
%
Out
CentralBrain-unspecified4669.7%-0.722873.7%
CA1218.2%-1.00615.8%
SPS812.1%-1.00410.5%

Connectivity

Inputs

upstream
partner
#NTconns
ITP
%
In
CV
VC4_adPN1ACh1.431.2%0.0
DNES32unc0.918.8%0.3
DNES21unc0.49.4%0.0
CB31401ACh0.36.2%0.0
VC3_adPN1ACh0.36.2%0.0
ITP1unc0.36.2%0.0
KCg-m2DA0.36.2%0.0
PS2381ACh0.13.1%0.0
CB30981ACh0.13.1%0.0
SMP3701Glu0.13.1%0.0
SMP727m1ACh0.13.1%0.0
DNp251GABA0.13.1%0.0

Outputs

downstream
partner
#NTconns
ITP
%
Out
CV
DH441unc0.412.0%0.0
IPC1unc0.38.0%0.0
SMP710m1ACh0.38.0%0.0
DNES31unc0.38.0%0.0
CAPA1unc0.38.0%0.0
ITP2unc0.38.0%0.0
KCab-s2DA0.38.0%0.0
KCg-m2DA0.38.0%0.0
MeVC271unc0.14.0%0.0
DNp341ACh0.14.0%0.0
CB06571ACh0.14.0%0.0
DNES21unc0.14.0%0.0
CB09751ACh0.14.0%0.0
SMP727m1ACh0.14.0%0.0
DC3_adPN1ACh0.14.0%0.0
PI31unc0.14.0%0.0