Male CNS – Cell Type Explorer

HSE(R)

2
Total Neurons
Right: 1 | Left: 1
log ratio : 0.00
19,173
Total Synapses
Post: 18,731 | Pre: 442
log ratio : -5.41
19,173
Mean Synapses
Post: 18,731 | Pre: 442
log ratio : -5.41
ACh(90.7% CL)
Neurotransmitter

Mean Synapse Count per Layer

 
Post
Pre
LA
-
-
ME 1ME 2ME 3ME 4ME 5ME 6ME 7ME 8ME 9ME 10Total
-----------
-----------
 
Post
Pre
LO 1LO 2LO 3LO 4LO 5ALO 5BLO 6Total
--2-121-
--------
AME
-
-
 
Post
Pre
LOP 1LOP 2LOP 3LOP 4Total
16,5411,895--18,436
131--14
central brain
228
424

Population spatial coverage

Neuron Visualization

Dark Light

Navigation

🖱️ Left Mouse Button (LMB) + Drag
Rotate the view.
Shift + 🖱️ LMB + Drag
Translate the view.
Ctrl + Mousewheel
Zoom in and out.
⌨️ z
Reset view to closest
⌨️ o
Toggle between orthographic and perspective projection.
⌨️ l
Reassign random colors to neurons and ROI meshes.

Filtering

screenshot of neuroglancer filter section
1
Use text to filter neurons by type name.

2
Use tags to require or exclude neurons of certain properties, e.g. `soma_side`.

3
Add / remove matched neurons from view.

4
Remove currently selected neurons from view.

5
Toggle individual neurons from view.
?

ROI Innervation (6 ROIs)

ROI Name
In
%
In
log
ratio

Out
%
Out
LOP(R)18,43698.4%-10.36143.2%
IPS(R)1580.8%1.0833575.8%
GNG620.3%0.357917.9%
Optic-unspecified(R)610.3%-3.9340.9%
CentralBrain-unspecified80.0%0.32102.3%
LO(R)60.0%-inf00.0%

Connectivity

Inputs

upstream
partner
#NTconns
HSE
%
In
CV
T5a (R)540ACh8,42446.0%0.5
T4a (R)561ACh7,15339.0%0.6
LPi21 (R)1GABA1,3867.6%0.0
Y13 (R)73Glu3892.1%0.5
Y12 (R)56Glu2231.2%0.6
TmY5a (R)80Glu1320.7%0.5
Y11 (R)46Glu1230.7%0.5
Am1 (R)1GABA950.5%0.0
PS321 (L)1GABA400.2%0.0
PS324 (R)5GABA380.2%0.7
LLPC1 (R)19ACh260.1%0.6
LPi2d (R)10Glu250.1%0.6
PS070 (R)1GABA200.1%0.0
TmY20 (R)16ACh200.1%0.4
PS324 (L)5GABA180.1%0.4
CB1421 (R)1GABA130.1%0.0
LPLC2 (R)8ACh130.1%0.6
TmY9b (R)9ACh100.1%0.3
VCH (L)1GABA90.0%0.0
DNb02 (L)2Glu90.0%0.3
Tlp12 (R)8Glu90.0%0.3
Y14 (R)5Glu80.0%0.5
PS078 (L)1GABA70.0%0.0
LPC1 (R)5ACh70.0%0.3
LPLC1 (R)2ACh60.0%0.7
Tlp13 (R)5Glu60.0%0.3
LPT26 (R)1ACh50.0%0.0
MeVC25 (R)1Glu50.0%0.0
DCH (L)1GABA50.0%0.0
LoVC22 (L)2DA50.0%0.6
LPi3412 (R)4Glu50.0%0.3
TmY18 (R)5ACh50.0%0.0
WED023 (R)1GABA40.0%0.0
GNG494 (R)1ACh40.0%0.0
HSN (R)1ACh40.0%0.0
LPT23 (R)2ACh40.0%0.0
T2 (R)3ACh40.0%0.4
Tlp11 (R)3Glu40.0%0.4
LPT113 (R)1GABA30.0%0.0
LPi12 (R)1GABA30.0%0.0
PS059 (R)2GABA30.0%0.3
OA-VUMa4 (M)2OA30.0%0.3
T4d (R)3ACh30.0%0.0
Y3 (R)1ACh20.0%0.0
PS331 (R)1GABA20.0%0.0
SAD013 (L)1GABA20.0%0.0
Nod2 (R)1GABA20.0%0.0
OLVC3 (L)1ACh20.0%0.0
Li32 (R)1GABA20.0%0.0
OA-AL2i1 (R)1unc20.0%0.0
PS331 (L)2GABA20.0%0.0
PS072 (R)2GABA20.0%0.0
T4b (R)2ACh20.0%0.0
TmY9a (R)2ACh20.0%0.0
PS077 (R)2GABA20.0%0.0
LOLP1 (R)2GABA20.0%0.0
TmY3 (R)1ACh10.0%0.0
GNG283 (R)1unc10.0%0.0
T5b (R)1ACh10.0%0.0
Tm4 (R)1ACh10.0%0.0
TmY4 (R)1ACh10.0%0.0
TmY10 (R)1ACh10.0%0.0
LPi2e (R)1Glu10.0%0.0
LPT112 (R)1GABA10.0%0.0
TmY17 (R)1ACh10.0%0.0
PS055 (R)1GABA10.0%0.0
TmY15 (R)1GABA10.0%0.0
TmY14 (R)1unc10.0%0.0
TmY16 (R)1Glu10.0%0.0
LPi2c (R)1Glu10.0%0.0
TmY19a (R)1GABA10.0%0.0
LPT114 (R)1GABA10.0%0.0
PS348 (R)1unc10.0%0.0
H1 (L)1Glu10.0%0.0
dCal1 (R)1GABA10.0%0.0
DNa02 (R)1ACh10.0%0.0

Outputs

downstream
partner
#NTconns
HSE
%
Out
CV
DNp15 (R)1ACh12214.4%0.0
GNG283 (R)1unc698.1%0.0
PS321 (R)1GABA667.8%0.0
PS072 (R)5GABA526.1%0.7
PS324 (R)6GABA526.1%0.8
PS324 (L)6GABA516.0%0.6
PS321 (L)1GABA394.6%0.0
PS047_b (R)1ACh313.7%0.0
GNG647 (R)1unc303.5%0.0
PS070 (R)1GABA242.8%0.0
DNa02 (R)1ACh222.6%0.0
CB1421 (R)1GABA182.1%0.0
LPT114 (R)6GABA161.9%0.4
DNg41 (R)1Glu111.3%0.0
GNG494 (R)1ACh111.3%0.0
GNG105 (R)1ACh111.3%0.0
T5a (R)7ACh111.3%0.5
PLP256 (R)1Glu101.2%0.0
TmY14 (R)4unc101.2%0.4
PS077 (R)6GABA91.1%0.7
T4a (R)7ACh91.1%0.4
GNG276 (R)1unc80.9%0.0
MeVCMe1 (R)2ACh80.9%0.8
GNG653 (R)1unc70.8%0.0
PS348 (R)1unc70.8%0.0
LPi12 (R)1GABA60.7%0.0
PS331 (L)1GABA50.6%0.0
DNge086 (R)1GABA50.6%0.0
GNG314 (R)1unc50.6%0.0
PS349 (R)1unc50.6%0.0
DNp18 (R)1ACh50.6%0.0
DNb02 (L)2Glu50.6%0.2
CB3746 (R)2GABA50.6%0.2
PS054 (R)1GABA40.5%0.0
DNb03 (R)1ACh40.5%0.0
GNG163 (R)2ACh40.5%0.5
LoVC15 (R)2GABA40.5%0.5
PS080 (R)1Glu30.4%0.0
DNge071 (R)1GABA30.4%0.0
TmY15 (R)1GABA30.4%0.0
GNG648 (R)1unc30.4%0.0
LPi21 (R)1GABA30.4%0.0
VCH (L)1GABA30.4%0.0
H2 (L)1ACh30.4%0.0
OCC02a (R)2unc30.4%0.3
LPT116 (R)2GABA30.4%0.3
PS059 (R)2GABA30.4%0.3
OA-VUMa4 (M)2OA30.4%0.3
CB1792 (R)1GABA20.2%0.0
WED040_b (R)1Glu20.2%0.0
LLPC1 (R)1ACh20.2%0.0
PS078 (L)1GABA20.2%0.0
PS221 (R)1ACh20.2%0.0
PS090 (R)1GABA20.2%0.0
OLVC3 (L)1ACh20.2%0.0
MeVC25 (R)1Glu20.2%0.0
DCH (L)1GABA20.2%0.0
HSN (R)1ACh20.2%0.0
PS194 (R)2Glu20.2%0.0
LC18 (R)2ACh20.2%0.0
PS055 (R)2GABA20.2%0.0
DNbe001 (R)1ACh10.1%0.0
GNG416 (L)1ACh10.1%0.0
PS328 (R)1GABA10.1%0.0
T5c (R)1ACh10.1%0.0
T4c (R)1ACh10.1%0.0
TmY9b (R)1ACh10.1%0.0
TmY20 (R)1ACh10.1%0.0
PS316 (R)1GABA10.1%0.0
CB3748 (R)1GABA10.1%0.0
Y11 (R)1Glu10.1%0.0
Y12 (R)1Glu10.1%0.0
Y3 (R)1ACh10.1%0.0
TmY17 (R)1ACh10.1%0.0
PS331 (R)1GABA10.1%0.0
PVLP046 (R)1GABA10.1%0.0
LPLC2 (R)1ACh10.1%0.0
LPT31 (R)1ACh10.1%0.0
PS078 (R)1GABA10.1%0.0
PS060 (R)1GABA10.1%0.0
CB0671 (L)1GABA10.1%0.0
PS307 (R)1Glu10.1%0.0
PS013 (R)1ACh10.1%0.0
DNge026 (R)1Glu10.1%0.0
DNge006 (R)1ACh10.1%0.0
MeVC11 (R)1ACh10.1%0.0
MeVC11 (L)1ACh10.1%0.0
HSS (R)1ACh10.1%0.0