Male CNS – Cell Type Explorer

H2(R)

2
Total Neurons
Right: 1 | Left: 1
log ratio : 0.00
35,742
Total Synapses
Post: 33,519 | Pre: 2,223
log ratio : -3.91
35,742
Mean Synapses
Post: 33,519 | Pre: 2,223
log ratio : -3.91
ACh(91.4% CL)
Neurotransmitter

Mean Synapse Count per Layer

 
Post
Pre
LA
-
-
ME 1ME 2ME 3ME 4ME 5ME 6ME 7ME 8ME 9ME 10Total
-----------
-----------
 
Post
Pre
LO 1LO 2LO 3LO 4LO 5ALO 5BLO 6Total
--7-----
--------
AME
-
-
 
Post
Pre
LOP 1LOP 2LOP 3LOP 4Total
1,61430,1341,103-32,851
26441142-609
central brain
659
1,599

Population spatial coverage

Neuron Visualization

Dark Light

Navigation

🖱️ Left Mouse Button (LMB) + Drag
Rotate the view.
Shift + 🖱️ LMB + Drag
Translate the view.
Ctrl + Mousewheel
Zoom in and out.
⌨️ z
Reset view to closest
⌨️ o
Toggle between orthographic and perspective projection.
⌨️ l
Reassign random colors to neurons and ROI meshes.

Filtering

screenshot of neuroglancer filter section
1
Use text to filter neurons by type name.

2
Use tags to require or exclude neurons of certain properties, e.g. `soma_side`.

3
Add / remove matched neurons from view.

4
Remove currently selected neurons from view.

5
Toggle individual neurons from view.
?

ROI Innervation (11 ROIs)

ROI Name
In
%
In
log
ratio

Out
%
Out
LOP(R)32,85198.0%-5.7560927.4%
IPS(L)4751.4%1.301,17252.7%
GNG620.2%1.381617.2%
WED(L)400.1%1.721325.9%
LAL(L)230.1%1.71753.4%
CentralBrain-unspecified330.1%0.51472.1%
Optic-unspecified(R)20.0%2.91150.7%
LAL(R)100.0%-1.0050.2%
PVLP(R)120.0%-inf00.0%
PLP(R)40.0%0.8170.3%
LO(R)70.0%-inf00.0%

Connectivity

Inputs

upstream
partner
#NTconns
H2
%
In
CV
T5b (R)791ACh14,64844.6%0.4
T4b (R)779ACh12,31937.5%0.4
LPi12 (R)2GABA2,2867.0%0.1
LPi2c (R)27Glu7072.2%0.5
Tlp13 (R)55Glu5441.7%0.5
Tlp12 (R)59Glu2550.8%0.6
LOLP1 (R)32GABA2140.7%0.8
LPT100 (R)12ACh1880.6%1.0
TmY5a (R)121Glu1670.5%0.4
CB3740 (L)2GABA1260.4%0.0
TmY15 (R)23GABA880.3%0.9
LPC1 (R)49ACh850.3%0.5
LPi2b (R)1GABA640.2%0.0
LPT23 (R)3ACh600.2%0.3
LLPC3 (R)26ACh590.2%0.7
PS070 (L)1GABA540.2%0.0
CB3748 (L)2GABA500.2%0.1
LPLC2 (R)28ACh450.1%0.6
Y11 (R)25Glu440.1%0.6
Am1 (R)1GABA390.1%0.0
LPi21 (R)1GABA390.1%0.0
Y13 (R)26Glu390.1%0.6
LPi2d (R)15Glu350.1%0.8
PS072 (L)4GABA290.1%0.6
TmY3 (R)19ACh280.1%0.6
LPC2 (R)11ACh260.1%0.7
TmY20 (R)20ACh250.1%0.3
CB1421 (L)1GABA240.1%0.0
PS099_b (R)1Glu240.1%0.0
PS316 (L)1GABA230.1%0.0
Nod5 (R)1ACh220.1%0.0
PS321 (R)1GABA220.1%0.0
LPi3412 (R)14Glu210.1%0.9
T4c (R)16ACh210.1%0.4
LOP_LO_unclear (R)1Glu200.1%0.0
Tlp14 (R)9Glu200.1%0.7
Y3 (R)18ACh200.1%0.3
OA-VUMa4 (M)2OA190.1%0.1
TmY13 (R)13ACh190.1%0.6
LPi2e (R)13Glu180.1%0.5
TmY4 (R)13ACh160.0%0.5
MeVPLp2 (L)1Glu110.0%0.0
Y12 (R)7Glu100.0%0.7
PS047_b (L)1ACh90.0%0.0
LPLC1 (R)6ACh90.0%0.7
LLPC1 (R)7ACh80.0%0.3
LPT57 (L)1ACh70.0%0.0
TmY14 (R)5unc70.0%0.6
PS077 (L)4GABA60.0%0.3
GNG616 (R)1ACh50.0%0.0
OA-AL2i1 (R)1unc50.0%0.0
HSE (L)1ACh50.0%0.0
LLPC2 (R)3ACh50.0%0.6
Y14 (R)3Glu50.0%0.6
AN07B037_a (R)1ACh40.0%0.0
LC14a-1 (L)1ACh40.0%0.0
LPT53 (R)1GABA40.0%0.0
T5c (R)3ACh40.0%0.4
LPi3b (R)3Glu40.0%0.4
LAL085 (R)1Glu30.0%0.0
LAL206 (L)1Glu30.0%0.0
AN06B009 (R)1GABA30.0%0.0
DCH (L)1GABA30.0%0.0
VCH (R)1GABA30.0%0.0
DNb03 (L)2ACh30.0%0.3
T4a (R)2ACh30.0%0.3
TmY9a (R)2ACh30.0%0.3
Tlp11 (R)2Glu30.0%0.3
LPLC4 (R)2ACh30.0%0.3
CB4106 (R)2ACh30.0%0.3
DNge113 (R)2ACh30.0%0.3
LC14b (L)3ACh30.0%0.0
LPT113 (R)3GABA30.0%0.0
PS320 (L)1Glu20.0%0.0
PS261 (L)1ACh20.0%0.0
WED040_a (L)1Glu20.0%0.0
Tm2 (R)1ACh20.0%0.0
LPi3a (R)1Glu20.0%0.0
GNG615 (R)1ACh20.0%0.0
PVLP005 (R)1Glu20.0%0.0
LPT111 (R)1GABA20.0%0.0
PS324 (L)1GABA20.0%0.0
GNG163 (L)1ACh20.0%0.0
DNb02 (R)1Glu20.0%0.0
DNg41 (L)1Glu20.0%0.0
AN06B011 (R)1ACh20.0%0.0
CB0582 (L)1GABA20.0%0.0
PS047_a (L)1ACh20.0%0.0
LC31b (R)1ACh20.0%0.0
Nod5 (L)1ACh20.0%0.0
Nod3 (R)1ACh20.0%0.0
vCal3 (R)1ACh20.0%0.0
Nod4 (R)1ACh20.0%0.0
LC13 (R)2ACh20.0%0.0
TmY21 (R)2ACh20.0%0.0
TmY16 (R)2Glu20.0%0.0
LPT114 (L)2GABA20.0%0.0
OA-VUMa1 (M)2OA20.0%0.0
DNp27 (L)1ACh10.0%0.0
SMP544 (R)1GABA10.0%0.0
PS239 (L)1ACh10.0%0.0
LAL206 (R)1Glu10.0%0.0
DNa02 (L)1ACh10.0%0.0
Nod1 (L)1ACh10.0%0.0
WED071 (L)1Glu10.0%0.0
LAL085 (L)1Glu10.0%0.0
LOP_unclear (R)1Glu10.0%0.0
CB2514 (L)1ACh10.0%0.0
T4d (R)1ACh10.0%0.0
WED002 (L)1ACh10.0%0.0
T2a (R)1ACh10.0%0.0
PS291 (L)1ACh10.0%0.0
PS197 (R)1ACh10.0%0.0
LPi4a (R)1Glu10.0%0.0
TmY17 (R)1ACh10.0%0.0
LAL180 (R)1ACh10.0%0.0
PS338 (R)1Glu10.0%0.0
CB3784 (L)1GABA10.0%0.0
LC9 (R)1ACh10.0%0.0
Li25 (R)1GABA10.0%0.0
LAL056 (R)1GABA10.0%0.0
PS054 (L)1GABA10.0%0.0
LAL049 (R)1GABA10.0%0.0
CB1792 (L)1GABA10.0%0.0
PS055 (L)1GABA10.0%0.0
PVLP200m_a (R)1ACh10.0%0.0
LPT31 (R)1ACh10.0%0.0
AVLP212 (R)1ACh10.0%0.0
TmY14 (L)1unc10.0%0.0
LPT51 (R)1Glu10.0%0.0
LAL122 (R)1Glu10.0%0.0
LPT31 (L)1ACh10.0%0.0
PS099_a (L)1Glu10.0%0.0
LAL203 (L)1ACh10.0%0.0
PS262 (L)1ACh10.0%0.0
LoVC22 (L)1DA10.0%0.0
PVLP012 (R)1ACh10.0%0.0
LPT29 (R)1ACh10.0%0.0
DNg41 (R)1Glu10.0%0.0
SAD076 (L)1Glu10.0%0.0
PS048_a (L)1ACh10.0%0.0
LPT26 (R)1ACh10.0%0.0
PVLP046 (L)1GABA10.0%0.0
PVLP120 (R)1ACh10.0%0.0
LPT22 (L)1GABA10.0%0.0
LT66 (L)1ACh10.0%0.0
LT66 (R)1ACh10.0%0.0
OLVC2 (L)1GABA10.0%0.0
GNG648 (L)1unc10.0%0.0
PS196_a (L)1ACh10.0%0.0
LPT50 (R)1GABA10.0%0.0
LPi4b (R)1GABA10.0%0.0
WED184 (L)1GABA10.0%0.0
LoVCLo3 (L)1OA10.0%0.0
LPT59 (L)1Glu10.0%0.0
LAL138 (R)1GABA10.0%0.0
PS100 (L)1GABA10.0%0.0
PS304 (L)1GABA10.0%0.0
5-HTPMPV03 (R)15-HT10.0%0.0
DNp27 (R)1ACh10.0%0.0
VS (R)1ACh10.0%0.0

Outputs

downstream
partner
#NTconns
H2
%
Out
CV
TmY20 (R)135ACh52311.4%0.6
PS047_b (L)1ACh3738.2%0.0
DCH (R)1GABA3357.3%0.0
DNb03 (L)2ACh3126.8%0.1
VCH (R)1GABA2956.5%0.0
LLPC1 (R)85ACh2275.0%0.6
DNp15 (L)1ACh2014.4%0.0
DNg41 (L)1Glu1994.4%0.0
PS072 (L)5GABA1914.2%0.3
PS077 (L)7GABA1032.3%0.4
PS321 (L)1GABA1022.2%0.0
Y11 (R)41Glu831.8%0.6
GNG283 (L)1unc771.7%0.0
LPi2d (R)21Glu721.6%0.5
MeVCMe1 (L)2ACh601.3%0.5
GNG285 (L)1ACh561.2%0.0
GNG276 (L)1unc501.1%0.0
DNge006 (L)1ACh491.1%0.0
CB3740 (L)2GABA491.1%0.1
MeVC11 (L)1ACh430.9%0.0
LPC2 (R)18ACh390.9%0.6
MeVC11 (R)1ACh330.7%0.0
PS194 (L)3Glu330.7%0.6
PS081 (L)1Glu320.7%0.0
GNG652 (L)1unc310.7%0.0
GNG163 (L)2ACh310.7%0.0
GNG161 (L)1GABA290.6%0.0
PLP178 (L)1Glu290.6%0.0
GNG647 (L)1unc280.6%0.0
CvN6 (R)1unc260.6%0.0
PS196_a (L)1ACh250.5%0.0
DNa02 (L)1ACh230.5%0.0
PS099_a (L)1Glu230.5%0.0
PS099_b (L)1Glu230.5%0.0
CB1792 (L)2GABA220.5%0.2
TmY16 (R)15Glu200.4%0.5
PS090 (L)1GABA190.4%0.0
CB2380 (L)1GABA180.4%0.0
LAL081 (L)1ACh180.4%0.0
Am1 (R)1GABA180.4%0.0
LPT114 (L)5GABA180.4%0.6
CB3748 (L)2GABA170.4%0.6
Y13 (R)15Glu160.4%0.2
CB0228 (L)1Glu150.3%0.0
PS316 (L)2GABA150.3%0.9
PLP256 (L)1Glu140.3%0.0
LPi21 (R)1GABA140.3%0.0
PS070 (L)1GABA130.3%0.0
CB1421 (L)1GABA130.3%0.0
GNG653 (L)1unc130.3%0.0
Y3 (R)12ACh130.3%0.3
DNa16 (L)1ACh120.3%0.0
GNG648 (L)1unc120.3%0.0
LAL056 (L)3GABA120.3%1.1
DNge026 (L)1Glu100.2%0.0
LPi12 (R)2GABA100.2%0.6
LAL145 (L)2ACh100.2%0.0
PS137 (L)2Glu90.2%0.3
WED038 (L)1Glu80.2%0.0
PS265 (L)1ACh80.2%0.0
DCH (L)1GABA80.2%0.0
Tlp11 (R)5Glu80.2%0.5
T5b (R)8ACh80.2%0.0
PS352 (L)1ACh70.2%0.0
PS047_a (L)1ACh70.2%0.0
PS324 (L)2GABA70.2%0.1
LPi2c (R)5Glu70.2%0.3
LPi2e (R)7Glu70.2%0.0
T4b (R)7ACh70.2%0.0
PS320 (L)1Glu60.1%0.0
PS197 (L)1ACh60.1%0.0
PS291 (L)2ACh60.1%0.7
DNb02 (L)2Glu60.1%0.7
PS324 (R)2GABA60.1%0.3
LPLC2 (R)6ACh60.1%0.0
PLP249 (L)1GABA50.1%0.0
PS234 (L)1ACh50.1%0.0
CB3784 (L)1GABA50.1%0.0
DNg46 (L)1Glu50.1%0.0
Nod5 (R)1ACh50.1%0.0
Nod4 (R)1ACh50.1%0.0
VCH (L)1GABA50.1%0.0
LPi14 (R)3Glu50.1%0.6
CB2792 (L)2GABA50.1%0.2
PS019 (L)2ACh50.1%0.2
LLPC2 (R)4ACh50.1%0.3
DNg10 (L)1GABA40.1%0.0
WED146_c (L)1ACh40.1%0.0
DNp12 (L)1ACh40.1%0.0
LPi2b (R)1GABA40.1%0.0
PS307 (L)1Glu40.1%0.0
PS055 (L)2GABA40.1%0.5
CB4062 (L)3GABA40.1%0.4
LPC1 (R)4ACh40.1%0.0
Tlp12 (R)4Glu40.1%0.0
PS118 (L)1Glu30.1%0.0
PS328 (L)1GABA30.1%0.0
GNG658 (L)1ACh30.1%0.0
DNge097 (L)1Glu30.1%0.0
DNge135 (L)1GABA30.1%0.0
GNG314 (L)1unc30.1%0.0
PS196_b (L)1ACh30.1%0.0
CB0164 (L)1Glu30.1%0.0
H1 (R)1Glu30.1%0.0
5-HTPMPV03 (L)15-HT30.1%0.0
HSE (L)1ACh30.1%0.0
WED040_a (L)2Glu30.1%0.3
GNG442 (L)2ACh30.1%0.3
T5d (R)3ACh30.1%0.0
TmY5a (R)3Glu30.1%0.0
Tlp13 (R)3Glu30.1%0.0
TmY17 (R)3ACh30.1%0.0
TmY15 (R)3GABA30.1%0.0
TmY14 (R)3unc30.1%0.0
PS308 (L)1GABA20.0%0.0
PS112 (L)1Glu20.0%0.0
DNge071 (L)1GABA20.0%0.0
CB4066 (L)1GABA20.0%0.0
DNpe008 (L)1ACh20.0%0.0
PS054 (L)1GABA20.0%0.0
SAD005 (L)1ACh20.0%0.0
PS060 (L)1GABA20.0%0.0
WED121 (L)1GABA20.0%0.0
SAD076 (L)1Glu20.0%0.0
PS099_b (R)1Glu20.0%0.0
PS321 (R)1GABA20.0%0.0
GNG546 (L)1GABA20.0%0.0
Nod1 (R)1ACh20.0%0.0
CvN4 (L)1unc20.0%0.0
Nod3 (R)1ACh20.0%0.0
PS349 (L)1unc20.0%0.0
LPT53 (R)1GABA20.0%0.0
WED195 (R)1GABA20.0%0.0
LPT22 (L)1GABA20.0%0.0
LPT50 (R)1GABA20.0%0.0
HSS (L)1ACh20.0%0.0
TmY4 (R)2ACh20.0%0.0
LPT100 (R)2ACh20.0%0.0
TmY9a (R)2ACh20.0%0.0
LLPC3 (R)2ACh20.0%0.0
Y14 (R)2Glu20.0%0.0
TmY3 (R)2ACh20.0%0.0
LPi3412 (R)2Glu20.0%0.0
LPT101 (R)2ACh20.0%0.0
DNpe054 (L)2ACh20.0%0.0
DNb02 (R)2Glu20.0%0.0
AN27X011 (L)1ACh10.0%0.0
CvN7 (R)1unc10.0%0.0
LAL121 (R)1Glu10.0%0.0
LAL126 (R)1Glu10.0%0.0
GNG382 (R)1Glu10.0%0.0
LAL073 (L)1Glu10.0%0.0
WED071 (L)1Glu10.0%0.0
CB0540 (L)1GABA10.0%0.0
PS261 (L)1ACh10.0%0.0
LPT110 (R)1ACh10.0%0.0
FB6M (L)1Glu10.0%0.0
CvN5 (L)1unc10.0%0.0
T5c (R)1ACh10.0%0.0
LoVC27 (L)1Glu10.0%0.0
T5a (R)1ACh10.0%0.0
LAL133_c (L)1Glu10.0%0.0
T4c (R)1ACh10.0%0.0
T4d (R)1ACh10.0%0.0
CB1805 (L)1Glu10.0%0.0
LPT111 (R)1GABA10.0%0.0
LPi3a (R)1Glu10.0%0.0
TmY13 (R)1ACh10.0%0.0
OCC02a (L)1unc10.0%0.0
CB1265 (L)1GABA10.0%0.0
Y12 (R)1Glu10.0%0.0
LOLP1 (R)1GABA10.0%0.0
TmY21 (R)1ACh10.0%0.0
Tlp14 (R)1Glu10.0%0.0
LPi43 (R)1Glu10.0%0.0
LPi34 (R)1Glu10.0%0.0
LOP_LO_unclear (R)1Glu10.0%0.0
DNpe015 (L)1ACh10.0%0.0
CB1222 (L)1ACh10.0%0.0
CB4106 (R)1ACh10.0%0.0
LAL025 (L)1ACh10.0%0.0
LAL122 (L)1Glu10.0%0.0
LPLC4 (R)1ACh10.0%0.0
AOTU052 (L)1GABA10.0%0.0
LAL143 (R)1GABA10.0%0.0
AN07B037_a (R)1ACh10.0%0.0
CB0657 (L)1ACh10.0%0.0
LPT31 (R)1ACh10.0%0.0
DNg09_b (R)1ACh10.0%0.0
CB0312 (L)1GABA10.0%0.0
WED008 (L)1ACh10.0%0.0
ExR8 (L)1ACh10.0%0.0
LAL166 (L)1ACh10.0%0.0
WED007 (L)1ACh10.0%0.0
WED182 (L)1ACh10.0%0.0
DNge113 (R)1ACh10.0%0.0
GNG306 (L)1GABA10.0%0.0
PS048_b (L)1ACh10.0%0.0
PLP301m (L)1ACh10.0%0.0
LAL121 (L)1Glu10.0%0.0
LPT23 (R)1ACh10.0%0.0
PS057 (L)1Glu10.0%0.0
DNg41 (R)1Glu10.0%0.0
DNge088 (L)1Glu10.0%0.0
GNG315 (L)1GABA10.0%0.0
DNge086 (R)1GABA10.0%0.0
MeVPMe1 (R)1Glu10.0%0.0
PS048_a (L)1ACh10.0%0.0
CB0582 (L)1GABA10.0%0.0
LoVC15 (L)1GABA10.0%0.0
LAL120_a (R)1Glu10.0%0.0
HST (L)1ACh10.0%0.0
LPT52 (R)1ACh10.0%0.0
PLP032 (R)1ACh10.0%0.0
LPT22 (R)1GABA10.0%0.0
OA-VUMa4 (M)1OA10.0%0.0
DNae002 (L)1ACh10.0%0.0
LAL026_a (L)1ACh10.0%0.0
Nod1 (L)1ACh10.0%0.0
LoVC18 (L)1DA10.0%0.0
CB0121 (R)1GABA10.0%0.0
AVLP710m (R)1GABA10.0%0.0
WED203 (L)1GABA10.0%0.0
LAL138 (R)1GABA10.0%0.0
OA-AL2i2 (L)1OA10.0%0.0
HSN (L)1ACh10.0%0.0
OA-VUMa1 (M)1OA10.0%0.0
5-HTPMPV03 (R)15-HT10.0%0.0