Male CNS – Cell Type Explorer

FC

3
Total Neurons
Right: 1 | Left: 2
log ratio : 1.00
2,127
Total Synapses
Right: 832 | Left: 1,295
log ratio : 0.64
709
Mean Synapses
Right: 832 | Left: 647.5
log ratio : -0.36
ACh(79.1% CL)
Neurotransmitter

Neuron Visualization

Dark Light

Navigation

🖱️ Left Mouse Button (LMB) + Drag
Rotate the view.
Shift + 🖱️ LMB + Drag
Translate the view.
Ctrl + Mousewheel
Zoom in and out.
⌨️ z
Reset view to closest
⌨️ o
Toggle between orthographic and perspective projection.
⌨️ l
Reassign random colors to neurons and ROI meshes.

Filtering

screenshot of neuroglancer filter section
1
Use text to filter neurons by type name.

2
Use tags to require or exclude neurons of certain properties, e.g. `soma_side`.

3
Add / remove matched neurons from view.

4
Remove currently selected neurons from view.

5
Toggle individual neurons from view.
?

ROI Innervation (5 ROIs)

ROI Name
In
%
In
log
ratio

Out
%
Out
FB1,64393.8%-3.9410728.5%
SMP613.5%1.5618048.0%
CRE150.9%2.307419.7%
CentralBrain-unspecified321.8%-1.19143.7%
ICL10.1%-inf00.0%

Connectivity

Inputs

upstream
partner
#NTconns
FC
%
In
CV
FB2F_a6Glu6210.8%0.2
FC1D17ACh295.1%0.7
FB2B_b4Glu295.1%0.3
FC1A10ACh21.73.8%0.6
FB2J_c2Glu213.7%0.0
FB2J_b2Glu19.33.4%0.0
FC1B14ACh18.73.3%0.6
FB2B_a4unc18.73.3%0.0
FB5A4GABA16.72.9%0.4
FC1C_b9ACh14.32.5%0.6
FC2C14ACh142.4%0.5
FB2J_a2Glu13.72.4%0.0
FB2G_b5Glu11.72.0%0.8
FB2H_b2Glu11.32.0%0.0
FC3_a6ACh10.71.9%0.6
FC1E10ACh101.7%0.4
PFNa14ACh101.7%0.8
FC3_b9ACh9.31.6%0.8
FC1F8ACh8.71.5%0.6
hDeltaI5ACh8.31.5%0.7
FB2H_a2Glu8.31.5%0.0
FC2B9ACh8.31.5%0.6
PFNp_c5ACh7.71.3%0.4
FB2M_a4Glu7.71.3%0.4
FB2K6Glu7.71.3%0.6
FC3_c8ACh7.31.3%0.6
FB2F_b3Glu6.71.2%0.1
FB6C_b3Glu6.31.1%0.3
FB3C7GABA61.0%0.4
FC1C_a8ACh61.0%0.7
FB4P_a3Glu61.0%0.5
FB2I_a7Glu61.0%0.5
FB2E4Glu5.71.0%0.2
FB6A_b2Glu50.9%0.0
PFNp_d6ACh50.9%0.4
hDeltaA2ACh4.70.8%0.4
FB6A_a2Glu4.70.8%0.0
PFNp_b8ACh4.30.8%0.5
FB2C5Glu40.7%0.3
FB2A4DA40.7%0.3
FS1A_c8ACh40.7%0.3
oviIN2GABA3.30.6%0.0
FB1H2DA3.30.6%0.0
FB4Q_b2Glu3.30.6%0.0
FB2G_a2Glu30.5%0.0
FB5V_b3Glu2.70.5%0.5
FB4O3Glu2.70.5%0.4
FB2F_d4Glu2.70.5%0.0
FC2A5ACh2.70.5%0.5
FB2M_b2Glu2.70.5%0.0
vDeltaI_a2ACh2.30.4%0.4
FB2D4Glu2.30.4%0.2
FB5D3Glu2.30.4%0.2
FB1G2ACh2.30.4%0.0
hDeltaJ3ACh20.3%0.0
SMP0892Glu20.3%0.0
FB4N2Glu20.3%0.0
FC2ACh1.70.3%0.6
hDeltaB3ACh1.70.3%0.0
FS1A_a4ACh1.70.3%0.3
SMP0812Glu1.70.3%0.0
PFR_a4unc1.70.3%0.2
PFNm_a4ACh1.70.3%0.0
vDeltaH1ACh1.30.2%0.0
hDeltaF2ACh1.30.2%0.5
FB4M2DA1.30.2%0.5
FS1A_b4ACh1.30.2%0.0
FB1E_a2Glu1.30.2%0.0
FB2F_c2Glu1.30.2%0.0
hDeltaH1ACh10.2%0.0
CRE0161ACh10.2%0.0
hDeltaM2ACh10.2%0.3
FB6W2Glu10.2%0.0
FB5I2Glu10.2%0.0
FB4R2Glu10.2%0.0
FB5X2Glu10.2%0.0
FB2L2Glu10.2%0.0
FB4Q_c2Glu10.2%0.0
PFNv3ACh10.2%0.0
FB1C3DA10.2%0.0
FB5E1Glu0.70.1%0.0
PFNp_a1ACh0.70.1%0.0
FB5O1Glu0.70.1%0.0
hDeltaG1ACh0.70.1%0.0
FB6F1Glu0.70.1%0.0
SMP3761Glu0.70.1%0.0
SMP153_a1ACh0.70.1%0.0
SMP5771ACh0.70.1%0.0
OA-VPM32OA0.70.1%0.0
FB5W_a2Glu0.70.1%0.0
FB4F_b2Glu0.70.1%0.0
FB4K2Glu0.70.1%0.0
FS1B_a2ACh0.70.1%0.0
FB4P_b2Glu0.70.1%0.0
FB3E2GABA0.70.1%0.0
PFR_b2ACh0.70.1%0.0
PFL11ACh0.30.1%0.0
SIP0671ACh0.30.1%0.0
hDeltaC1ACh0.30.1%0.0
FB1B1Glu0.30.1%0.0
vDeltaK1ACh0.30.1%0.0
vDeltaF1ACh0.30.1%0.0
FB1E_b1Glu0.30.1%0.0
SMP1801ACh0.30.1%0.0
FB4L1DA0.30.1%0.0
FB6D1Glu0.30.1%0.0
FB5C1Glu0.30.1%0.0
FS21ACh0.30.1%0.0
FS3_c1ACh0.30.1%0.0
FS3_a1ACh0.30.1%0.0
FB4E_b1Glu0.30.1%0.0
CRE0941ACh0.30.1%0.0
vDeltaI_b1ACh0.30.1%0.0
FB5Z1Glu0.30.1%0.0
FB4E_a1Glu0.30.1%0.0
SMP371_b1Glu0.30.1%0.0
FB4Y15-HT0.30.1%0.0
PFL31ACh0.30.1%0.0
SMP5411Glu0.30.1%0.0
LHPV5e31ACh0.30.1%0.0
mALD11GABA0.30.1%0.0
FS1B_b1ACh0.30.1%0.0
SMP1821ACh0.30.1%0.0
FB3A1Glu0.30.1%0.0

Outputs

downstream
partner
#NTconns
FC
%
Out
CV
oviIN2GABA30.79.0%0.0
FB3C13GABA29.38.6%0.5
FB2D6Glu298.5%0.4
SMP3762Glu10.73.1%0.0
SIP0672ACh92.7%0.0
FS1A_c13ACh92.7%0.6
SMP0813Glu8.32.5%0.3
PFL16ACh82.4%0.4
ATL0222ACh7.72.3%0.0
FB3E2GABA61.8%0.0
SMP0482ACh61.8%0.0
SMP371_b2Glu5.71.7%0.0
LAL0353ACh5.31.6%0.3
CRE0933ACh51.5%0.3
FC1C_b8ACh51.5%0.4
PLP042_a3Glu4.71.4%0.4
FB5Q4Glu4.71.4%0.2
SMP5772ACh4.31.3%0.0
FB5G_c2Glu41.2%0.0
FC1E5ACh41.2%0.7
FS1A_a8ACh41.2%0.4
FS1A_b6ACh41.2%0.5
FC1C_a9ACh3.71.1%0.4
FB4C2Glu2.70.8%0.0
LAL1822ACh2.70.8%0.0
SMP371_a1Glu2.30.7%0.0
CB28463ACh2.30.7%0.2
FB2K3Glu2.30.7%0.4
MBON042Glu2.30.7%0.0
LAL0224ACh2.30.7%0.4
CRE0141ACh20.6%0.0
CB30801Glu20.6%0.0
SMP2401ACh20.6%0.0
SMP3771ACh20.6%0.0
SMP3702Glu20.6%0.0
FB6P2Glu20.6%0.0
FS4C5ACh20.6%0.2
FS1B_a5ACh20.6%0.2
SMP1661GABA1.70.5%0.0
FC2ACh1.70.5%0.0
CRE0953ACh1.70.5%0.3
FB2L3Glu1.70.5%0.3
MBON272ACh1.70.5%0.0
FS4A2ACh1.70.5%0.0
SMP0072ACh1.70.5%0.0
FC1D5ACh1.70.5%0.0
PLP042_b2Glu1.70.5%0.0
vDeltaG1ACh1.30.4%0.0
LAL0521Glu1.30.4%0.0
SIP0871unc1.30.4%0.0
CB09511Glu1.30.4%0.0
FB1G1ACh1.30.4%0.0
SMP5412Glu1.30.4%0.0
SMP0892Glu1.30.4%0.0
FS4B3ACh1.30.4%0.2
FC1B3ACh1.30.4%0.2
PFL33ACh1.30.4%0.0
FS3_d2ACh1.30.4%0.0
FB1H2DA1.30.4%0.0
FB5G_a1Glu10.3%0.0
LHPV5g1_a1ACh10.3%0.0
CRE0941ACh10.3%0.0
CRE0161ACh10.3%0.0
hDeltaG1ACh10.3%0.0
SLP4511ACh10.3%0.0
SMP1101ACh10.3%0.0
mALD11GABA10.3%0.0
CB11511Glu10.3%0.0
SMP1891ACh10.3%0.0
FB2C2Glu10.3%0.3
PLP042_c1unc10.3%0.0
SIP0291ACh10.3%0.0
FS3_b1ACh10.3%0.0
FB5Z1Glu10.3%0.0
SMP3862ACh10.3%0.0
FB2B_b2Glu10.3%0.0
SIP0042ACh10.3%0.0
FB2A2DA10.3%0.0
FB2B_a2unc10.3%0.0
hDeltaA2ACh10.3%0.0
hDeltaJ3ACh10.3%0.0
FC2B3ACh10.3%0.0
FC3_b3ACh10.3%0.0
ATL0292ACh10.3%0.0
SMP1801ACh0.70.2%0.0
VES0401ACh0.70.2%0.0
SMP5421Glu0.70.2%0.0
SMP2371ACh0.70.2%0.0
SMP0121Glu0.70.2%0.0
FB6V1Glu0.70.2%0.0
SIP0221ACh0.70.2%0.0
CB15291ACh0.70.2%0.0
vDeltaC1ACh0.70.2%0.0
SMP3261ACh0.70.2%0.0
SMP0241Glu0.70.2%0.0
SMP0691Glu0.70.2%0.0
CB35231ACh0.70.2%0.0
FB5AA1Glu0.70.2%0.0
SMP153_b1ACh0.70.2%0.0
FB5F1Glu0.70.2%0.0
SMP1441Glu0.70.2%0.0
SMP1511GABA0.70.2%0.0
SMP2701ACh0.70.2%0.0
SMP568_d1ACh0.70.2%0.0
PFL22ACh0.70.2%0.0
FR22ACh0.70.2%0.0
FB2F_c2Glu0.70.2%0.0
SMP1881ACh0.70.2%0.0
vDeltaD2ACh0.70.2%0.0
FB2J_b1Glu0.70.2%0.0
FB2G_b2Glu0.70.2%0.0
FR12ACh0.70.2%0.0
hDeltaC2ACh0.70.2%0.0
FC1A2ACh0.70.2%0.0
CRE0092ACh0.70.2%0.0
FS22ACh0.70.2%0.0
PAM052DA0.70.2%0.0
PFNa2ACh0.70.2%0.0
FB2F_a2Glu0.70.2%0.0
SMP4562ACh0.70.2%0.0
CRE0831ACh0.30.1%0.0
FC3_c1ACh0.30.1%0.0
EPG1ACh0.30.1%0.0
hDeltaH1ACh0.30.1%0.0
CRE0261Glu0.30.1%0.0
PFNd1ACh0.30.1%0.0
LAL0901Glu0.30.1%0.0
FB5O1Glu0.30.1%0.0
SMP5621ACh0.30.1%0.0
CRE0701ACh0.30.1%0.0
SMP5041ACh0.30.1%0.0
LHPV10d11ACh0.30.1%0.0
OA-VPM31OA0.30.1%0.0
LAL0321ACh0.30.1%0.0
SIP0241ACh0.30.1%0.0
LHPV5e11ACh0.30.1%0.0
LAL0401GABA0.30.1%0.0
PPL1071DA0.30.1%0.0
FB4E_a1Glu0.30.1%0.0
SMP1111ACh0.30.1%0.0
vDeltaA_b1ACh0.30.1%0.0
FS3_a1ACh0.30.1%0.0
FB5S1Glu0.30.1%0.0
vDeltaF1ACh0.30.1%0.0
CB16501ACh0.30.1%0.0
hDeltaI1ACh0.30.1%0.0
FB5P1Glu0.30.1%0.0
FB2I_a1Glu0.30.1%0.0
AVLP4971ACh0.30.1%0.0
SMP1791ACh0.30.1%0.0
FB4P_a1Glu0.30.1%0.0
FB5C1Glu0.30.1%0.0
SMP568_a1ACh0.30.1%0.0
PFGs1unc0.30.1%0.0
PFR_b1ACh0.30.1%0.0
FB3A1Glu0.30.1%0.0
SMP1521ACh0.30.1%0.0
SMP0101Glu0.30.1%0.0
SMP153_a1ACh0.30.1%0.0
IB0171ACh0.30.1%0.0
FB5A1GABA0.30.1%0.0
CB27841GABA0.30.1%0.0
LAL0241ACh0.30.1%0.0
SMP5951Glu0.30.1%0.0
CB25501ACh0.30.1%0.0
SMP0091ACh0.30.1%0.0
FC1F1ACh0.30.1%0.0
FB2M_a1Glu0.30.1%0.0
hDeltaB1ACh0.30.1%0.0
IB0201ACh0.30.1%0.0
SMP1851ACh0.30.1%0.0
LHPV5e31ACh0.30.1%0.0
FB4L1DA0.30.1%0.0
AOTU0421GABA0.30.1%0.0
ExR61Glu0.30.1%0.0