Male CNS – Cell Type Explorer

ER4m

11
Total Neurons
Right: 6 | Left: 5
log ratio : -0.26
40,820
Total Synapses
Right: 22,600 | Left: 18,220
log ratio : -0.31
3,710.9
Mean Synapses
Right: 3,766.7 | Left: 3,644
log ratio : -0.05
GABA(89.2% CL)
Neurotransmitter

Neuron Visualization

Dark Light

Navigation

🖱️ Left Mouse Button (LMB) + Drag
Rotate the view.
Shift + 🖱️ LMB + Drag
Translate the view.
Ctrl + Mousewheel
Zoom in and out.
⌨️ z
Reset view to closest
⌨️ o
Toggle between orthographic and perspective projection.
⌨️ l
Reassign random colors to neurons and ROI meshes.

Filtering

screenshot of neuroglancer filter section
1
Use text to filter neurons by type name.

2
Use tags to require or exclude neurons of certain properties, e.g. `soma_side`.

3
Add / remove matched neurons from view.

4
Remove currently selected neurons from view.

5
Toggle individual neurons from view.
?

ROI Innervation (7 ROIs)

ROI Name
In
%
In
log
ratio

Out
%
Out
EB26,01692.9%-1.0312,74899.5%
BU1,8226.5%-5.88310.2%
CentralBrain-unspecified1180.4%-2.02290.2%
LAL330.1%-3.4630.0%
GA160.1%-4.0010.0%
aL10.0%0.0010.0%
gL10.0%-inf00.0%

Connectivity

Inputs

upstream
partner
#NTconns
ER4m
%
In
CV
ER4m11GABA1,325.552.8%0.0
EPG46ACh407.916.3%0.2
PEN_b(PEN2)22ACh172.56.9%0.6
TuBu0110ACh137.65.5%0.1
ER2_c20GABA79.23.2%0.3
PEN_a(PEN1)20ACh63.62.5%0.6
ER2_a12GABA622.5%0.3
EL18OA43.51.7%0.4
ER2_d5GABA33.11.3%0.4
ER3w_a7GABA32.51.3%0.3
ER4d26GABA28.41.1%0.5
ER2_b4GABA26.81.1%0.2
ExR24DA210.8%0.1
ExR325-HT16.80.7%0.0
ExR54Glu13.30.5%0.1
ExR14ACh9.10.4%0.2
AOTU0464Glu8.50.3%0.2
PEG15ACh6.60.3%0.7
ER3w_c5GABA4.80.2%0.7
ER512GABA2.20.1%0.7
ExR42Glu1.80.1%0.0
LAL2063Glu1.70.1%0.3
FB4Y45-HT1.10.0%0.5
ER3w_b6GABA10.0%0.6
ER63GABA0.90.0%0.3
FB1C3DA0.90.0%0.4
ER3d_c4GABA0.80.0%0.7
ExR73ACh0.80.0%0.4
TuBu022ACh0.70.0%0.0
ExR62Glu0.60.0%0.0
ER3d_a4GABA0.50.0%0.3
ER3d_e2GABA0.40.0%0.5
ER3d_b3GABA0.30.0%0.0
PFL11ACh0.20.0%0.0
LAL1231unc0.20.0%0.0
ER3a_a2GABA0.20.0%0.0
PFL21ACh0.20.0%0.0
SMP1922ACh0.20.0%0.0
ER3a_d1GABA0.10.0%0.0
LAL1841ACh0.10.0%0.0
FB2A1DA0.10.0%0.0
ER3p_a1GABA0.10.0%0.0
GLNO1unc0.10.0%0.0
LC331Glu0.10.0%0.0
SMP2381ACh0.10.0%0.0
LAL1901ACh0.10.0%0.0
ER3d_d1GABA0.10.0%0.0
ER3a_c1GABA0.10.0%0.0
DNc011unc0.10.0%0.0
ER1_b1GABA0.10.0%0.0
ER3m1GABA0.10.0%0.0
LAL0711GABA0.10.0%0.0
CB41831ACh0.10.0%0.0

Outputs

downstream
partner
#NTconns
ER4m
%
Out
CV
EPG46ACh1,927.541.3%0.2
ER4m11GABA1,325.528.4%0.1
EL18OA368.47.9%0.3
ER2_c20GABA200.24.3%0.2
ER3w_a7GABA160.13.4%0.4
ER2_a12GABA1453.1%0.3
ER2_b4GABA97.82.1%0.1
ER2_d5GABA93.52.0%0.3
ExR24DA63.61.4%0.0
ExR42Glu63.31.4%0.0
ER3w_c6GABA62.81.3%0.5
ER4d26GABA390.8%0.4
ExR54Glu23.40.5%0.2
ER3w_b17GABA18.20.4%1.1
PEN_a(PEN1)20ACh15.20.3%0.6
PEN_b(PEN2)22ACh12.50.3%0.7
ER3d_a7GABA7.10.2%0.4
ExR14ACh70.1%0.5
ER3d_c8GABA4.50.1%0.6
ExR84ACh4.40.1%0.5
FB1C3DA4.20.1%0.1
FB4Y45-HT40.1%0.4
ExR325-HT3.80.1%0.0
PEG10ACh3.70.1%0.6
ER3d_e7GABA2.90.1%0.4
ER55GABA2.10.0%0.8
ExR62Glu1.70.0%0.0
TuBu0110ACh1.50.0%0.3
ER3a_c3GABA0.70.0%0.1
ExR74ACh0.70.0%0.5
hDeltaK6ACh0.50.0%0.0
DNc011unc0.40.0%0.0
ER63GABA0.40.0%0.2
AOTU0411GABA0.20.0%0.0
ER3m2GABA0.20.0%0.0
PS1911Glu0.10.0%0.0
FB2B_b1Glu0.10.0%0.0
LAL1841ACh0.10.0%0.0
LAL0221ACh0.10.0%0.0
PFL31ACh0.10.0%0.0
ER3a_a1GABA0.10.0%0.0
CRE1051ACh0.10.0%0.0
LAL1211Glu0.10.0%0.0
PLP0781Glu0.10.0%0.0
FB5A1GABA0.10.0%0.0
AOTU0421GABA0.10.0%0.0
LAL0161ACh0.10.0%0.0
AOTU0461Glu0.10.0%0.0
SIP0271GABA0.10.0%0.0
PS0801Glu0.10.0%0.0
ER1_a1GABA0.10.0%0.0
ER3d_d1GABA0.10.0%0.0
DNc021unc0.10.0%0.0