Male CNS – Cell Type Explorer

CT1

2
Total Neurons
Right: 1 | Left: 1
log ratio : 0.00
219,294
Total Synapses
Right: 105,242 | Left: 114,052
log ratio : 0.12
109,647
Mean Synapses
Right: 105,242 | Left: 114,052
log ratio : 0.12
GABA(86.6% CL)
Neurotransmitter

Population spatial coverage

Neuron Visualization

Dark Light

Navigation

🖱️ Left Mouse Button (LMB) + Drag
Rotate the view.
Shift + 🖱️ LMB + Drag
Translate the view.
Ctrl + Mousewheel
Zoom in and out.
⌨️ z
Reset view to closest
⌨️ o
Toggle between orthographic and perspective projection.
⌨️ l
Reassign random colors to neurons and ROI meshes.

Filtering

screenshot of neuroglancer filter section
1
Use text to filter neurons by type name.

2
Use tags to require or exclude neurons of certain properties, e.g. `soma_side`.

3
Add / remove matched neurons from view.

4
Remove currently selected neurons from view.

5
Toggle individual neurons from view.
?

ROI Innervation (11 ROIs)

ROI Name
In
%
In
log
ratio

Out
%
Out
LO97,29161.4%-1.3139,29464.7%
ME57,05936.0%-1.5020,23733.3%
Optic-unspecified4,0342.5%-1.841,1261.9%
CentralBrain-unspecified730.0%-0.83410.1%
gL300.0%-3.3230.0%
VES160.0%-0.30130.0%
LOP250.0%-3.6420.0%
SPS70.0%1.00140.0%
WED20.0%2.1790.0%
PLP20.0%2.0080.0%
LAL30.0%0.7450.0%

Connectivity

Inputs

upstream
partner
#NTconns
CT1
%
In
CV
Tm91727ACh26,069.533.7%0.3
T4b1679ACh6,0147.8%0.4
Tm11727ACh5,3666.9%0.4
T4a1669ACh5,1046.6%0.4
T4c1752ACh4,760.56.2%0.4
T5a1644ACh4,486.55.8%0.4
T5b1697ACh4,2125.4%0.4
T4d1686ACh4,1505.4%0.4
T5c1678ACh3,4914.5%0.5
T5d1565ACh2,974.53.8%0.5
Mi91478Glu2,842.53.7%0.6
Mi11506ACh2,6153.4%0.6
Mi10443ACh1,7752.3%0.4
OLVC32ACh1,0731.4%0.0
Tm2672ACh4650.6%0.5
C3691GABA441.50.6%0.4
MeVC262ACh1470.2%0.0
TmY15130GABA140.50.2%0.7
Tm4161ACh136.50.2%0.9
LT332GABA1030.1%0.0
MeVPLp22Glu720.1%0.0
Tm366ACh710.1%1.0
TmY19a55GABA620.1%0.6
LoVC164Glu60.50.1%0.2
TmY1469unc53.50.1%0.7
Tm2332GABA440.1%0.5
Mi470GABA400.1%0.4
MeVC122ACh360.0%0.0
T4_unclear4ACh35.50.0%0.4
OA-AL2i12unc30.50.0%0.0
TmY1839ACh21.50.0%0.3
TmY1328ACh190.0%0.4
Tm2036ACh180.0%0.0
DNc022unc16.50.0%0.0
Tm3224Glu160.0%0.3
LC14b6ACh160.0%0.7
KCg-m21DA14.50.0%0.5
Y1413Glu13.50.0%1.4
MeVC252Glu13.50.0%0.0
Y1318Glu12.50.0%0.5
Pm320GABA120.0%0.3
MeVC112ACh11.50.0%0.0
MeVC51ACh110.0%0.0
Tm1219ACh100.0%0.1
DNc011unc90.0%0.0
Pm1013GABA90.0%0.4
Tm3714Glu8.50.0%0.2
TmY315ACh8.50.0%0.3
LO_ME_unclear1Glu7.50.0%0.0
Tm5c9Glu7.50.0%0.3
Li294GABA70.0%0.6
Pm2a6GABA70.0%0.7
TmY19b12GABA70.0%0.3
OA-AL2i24OA70.0%0.2
C212GABA70.0%0.2
TmY5a9Glu6.50.0%0.4
Pm84GABA6.50.0%0.3
Tm2912Glu6.50.0%0.2
AN09A0054unc6.50.0%0.4
MeVPMe122ACh60.0%0.0
Y129Glu60.0%0.3
Tm5Y10ACh5.50.0%0.3
Li254GABA50.0%0.5
Am12GABA50.0%0.0
T29ACh50.0%0.1
MeVPLo14Glu4.50.0%0.5
MeVPOL11ACh40.0%0.0
Y35ACh40.0%0.5
TmY165Glu3.50.0%0.3
LoVC243GABA30.0%0.7
TmY9b6ACh30.0%0.0
LPi2e1Glu2.50.0%0.0
DNp302Glu2.50.0%0.0
Pm55GABA2.50.0%0.0
LT351GABA20.0%0.0
Pm2b2GABA20.0%0.5
Pm92GABA20.0%0.5
MeTu3c4ACh20.0%0.0
SMP4562ACh20.0%0.0
Pm73GABA20.0%0.2
Tm5a3ACh20.0%0.2
Pm14GABA20.0%0.0
Li284GABA20.0%0.0
ANXXX3082ACh20.0%0.0
LPT1111GABA1.50.0%0.0
SMP0521ACh1.50.0%0.0
LoVC211GABA1.50.0%0.0
Tm343Glu1.50.0%0.0
TmY203ACh1.50.0%0.0
T2a3ACh1.50.0%0.0
Tm241ACh10.0%0.0
LLPC11ACh10.0%0.0
mALB11GABA10.0%0.0
MeLo81GABA10.0%0.0
TmY212ACh10.0%0.0
MeVP62Glu10.0%0.0
MeLo112Glu10.0%0.0
MeTu12ACh10.0%0.0
Tm302GABA10.0%0.0
AN27X0132unc10.0%0.0
DCH2GABA10.0%0.0
Tlp131Glu0.50.0%0.0
WED0741GABA0.50.0%0.0
ORN_VC31ACh0.50.0%0.0
T5a_unclear1unc0.50.0%0.0
PAM011DA0.50.0%0.0
T31ACh0.50.0%0.0
Dm101GABA0.50.0%0.0
TmY101ACh0.50.0%0.0
Tm381ACh0.50.0%0.0
Y111Glu0.50.0%0.0
PS0491GABA0.50.0%0.0
Pm41GABA0.50.0%0.0
Li151GABA0.50.0%0.0
LPLC11ACh0.50.0%0.0
MeLo131Glu0.50.0%0.0
MeVPMe91Glu0.50.0%0.0
GNG1011unc0.50.0%0.0
VES0171ACh0.50.0%0.0
SMP4571ACh0.50.0%0.0
PS1731Glu0.50.0%0.0
lLN2T_e1ACh0.50.0%0.0
LPT531GABA0.50.0%0.0
Pm121GABA0.50.0%0.0
MeVCMe11ACh0.50.0%0.0
5-HTPMPV0315-HT0.50.0%0.0
VCH1GABA0.50.0%0.0
WEDPN10B1GABA0.50.0%0.0
LOLP11GABA0.50.0%0.0
Li211ACh0.50.0%0.0
TmY9a1ACh0.50.0%0.0
TmY41ACh0.50.0%0.0
CB02801ACh0.50.0%0.0
MeTu2a1ACh0.50.0%0.0
LLPC31ACh0.50.0%0.0
LPT1131GABA0.50.0%0.0
MeVP41ACh0.50.0%0.0
LPC11ACh0.50.0%0.0
ME_unclear1Glu0.50.0%0.0
WED0821GABA0.50.0%0.0
AVLP0151Glu0.50.0%0.0
MeLo141Glu0.50.0%0.0
OA-ASM11OA0.50.0%0.0
SMP6041Glu0.50.0%0.0
LoVC121GABA0.50.0%0.0
Pm111GABA0.50.0%0.0
MeVPMe21Glu0.50.0%0.0
dCal11GABA0.50.0%0.0

Outputs

downstream
partner
#NTconns
CT1
%
Out
CV
T5b1715ACh20,33616.0%0.3
T5a1663ACh19,70815.5%0.3
T5c1717ACh16,945.513.4%0.3
T5d1618ACh15,69112.4%0.3
T4a1676ACh11,5569.1%0.3
T4b1682ACh10,741.58.5%0.4
T4d1704ACh10,2618.1%0.4
T4c1762ACh10,101.58.0%0.4
Tm91700ACh8,638.56.8%0.3
Mi1795ACh572.50.5%0.5
Tm1738ACh5250.4%0.5
LT332GABA2860.2%0.0
C3424GABA277.50.2%0.4
TmY18370ACh247.50.2%0.5
Tm2334ACh191.50.2%0.3
Mi9291Glu172.50.1%0.4
C2104GABA580.0%0.3
TmY1459unc570.0%1.1
TmY1572GABA540.0%0.7
Mi1076ACh40.50.0%0.2
Mi437GABA210.0%0.4
T239ACh200.0%0.1
TmY19a30GABA19.50.0%0.4
T4_unclear4ACh13.50.0%0.4
KCg-m25DA130.0%0.2
OLVC32ACh12.50.0%0.0
Tm413ACh110.0%0.7
LPi2e1Glu10.50.0%0.0
Tm2312GABA10.50.0%0.5
Tm321ACh10.50.0%0.0
T5a_unclear1unc90.0%0.0
T2a16ACh90.0%0.3
Tm1215ACh90.0%0.4
TmY5a15Glu7.50.0%0.0
Pm1010GABA70.0%0.5
Tm2013ACh6.50.0%0.0
OA-AL2i12unc6.50.0%0.0
Y311ACh6.50.0%0.2
TmY312ACh6.50.0%0.1
T312ACh60.0%0.0
Tm5Y12ACh60.0%0.0
LO_ME_unclear1Glu5.50.0%0.0
OA-AL2i24OA5.50.0%0.5
Pm310GABA50.0%0.0
TmY217ACh4.50.0%0.4
MeVC252Glu4.50.0%0.0
LT352GABA4.50.0%0.0
LoVC163Glu40.0%0.2
Tm68ACh40.0%0.0
PS1731Glu30.0%0.0
DNc022unc30.0%0.0
Y142Glu30.0%0.0
Pm2a6GABA30.0%0.0
Tm166ACh30.0%0.0
MeVP41ACh2.50.0%0.0
MeVP65Glu2.50.0%0.0
Tm295Glu2.50.0%0.0
Pm113GABA2.50.0%0.3
MeVPMe23Glu2.50.0%0.0
Tm5a5ACh2.50.0%0.0
MeVPLp22Glu2.50.0%0.0
TmY104ACh2.50.0%0.2
TmY205ACh2.50.0%0.0
TmY175ACh2.50.0%0.0
TmY9b5ACh2.50.0%0.0
WED0801GABA20.0%0.0
Nod41ACh20.0%0.0
WED1632ACh20.0%0.5
MeLo92Glu20.0%0.5
Y133Glu20.0%0.4
Tm5c4Glu20.0%0.0
Tm324Glu20.0%0.0
Tm374Glu20.0%0.0
TmY9a4ACh20.0%0.0
LPLC24ACh20.0%0.0
LPT501GABA1.50.0%0.0
AN27X0131unc1.50.0%0.0
TmY132ACh1.50.0%0.3
Tm393ACh1.50.0%0.0
MeLo113Glu1.50.0%0.0
TmY19b2GABA1.50.0%0.0
MeVPMe122ACh1.50.0%0.0
HSN2ACh1.50.0%0.0
LT662ACh1.50.0%0.0
MeVC112ACh1.50.0%0.0
TmY43ACh1.50.0%0.0
Pm13GABA1.50.0%0.0
LC43ACh1.50.0%0.0
Pm73GABA1.50.0%0.0
PRW0101ACh10.0%0.0
LPT301ACh10.0%0.0
OA-AL2i31OA10.0%0.0
LT361GABA10.0%0.0
LAL1831ACh10.0%0.0
DCH1GABA10.0%0.0
LPT311ACh10.0%0.0
MeLo12ACh10.0%0.0
LPLC12ACh10.0%0.0
LC14b2ACh10.0%0.0
LPLC42ACh10.0%0.0
LPi142Glu10.0%0.0
TmY162Glu10.0%0.0
MeTu3c2ACh10.0%0.0
Tm312GABA10.0%0.0
MeTu12ACh10.0%0.0
Y122Glu10.0%0.0
Pm82GABA10.0%0.0
Li282GABA10.0%0.0
WED0742GABA10.0%0.0
Nod22GABA10.0%0.0
AN09A0052unc10.0%0.0
Tm5b2ACh10.0%0.0
Y111Glu0.50.0%0.0
Pm51GABA0.50.0%0.0
Tm301GABA0.50.0%0.0
Li251GABA0.50.0%0.0
SMP7341ACh0.50.0%0.0
PS0491GABA0.50.0%0.0
Li151GABA0.50.0%0.0
MeVP391GABA0.50.0%0.0
Li371Glu0.50.0%0.0
PS1751Glu0.50.0%0.0
LAL1571ACh0.50.0%0.0
Li291GABA0.50.0%0.0
MeVC121ACh0.50.0%0.0
SAD0431GABA0.50.0%0.0
DNc011unc0.50.0%0.0
Nod11ACh0.50.0%0.0
Am11GABA0.50.0%0.0
VES1061GABA0.50.0%0.0
PRW0071unc0.50.0%0.0
MBON011Glu0.50.0%0.0
Mi161GABA0.50.0%0.0
MeLo101Glu0.50.0%0.0
CB40771ACh0.50.0%0.0
LPT1121GABA0.50.0%0.0
WEDPN10A1GABA0.50.0%0.0
Tlp121Glu0.50.0%0.0
MeVP321ACh0.50.0%0.0
VES0161GABA0.50.0%0.0
HSS1ACh0.50.0%0.0
MeVC11ACh0.50.0%0.0
VCH1GABA0.50.0%0.0
MeTu3b1ACh0.50.0%0.0
Tm341Glu0.50.0%0.0
LoVC241GABA0.50.0%0.0
ANXXX1161ACh0.50.0%0.0
Mi181GABA0.50.0%0.0
SMP7311ACh0.50.0%0.0
Tm241ACh0.50.0%0.0
LLPC31ACh0.50.0%0.0
GNG5961ACh0.50.0%0.0