Home
Types List
Help
Male CNS – Cell Type Explorer
GitHub
YouTube
neuPrint ⧉

CB3998(R) ⧉

5
Neurons
Right: 2 | Left: 3
log ratio : 0.58
860
Synapses
Post: 554 | Pre: 306
log ratio : -0.86
1,364
Connections
Upstream: 523 | Downstream: 841
log ratio : 0.69
Glu (83.3% CL)
Neurotransmitter
430
Synapses per Neuron
Post: 277 | Pre: 153
log ratio : -0.86
682
Connections per Neuron
Upstream: 261.5 | Downstream: 420.5
log ratio : 0.69

Neuron Visualization ⧉ ⤓

Dark Light

Navigation

🖱️ Left Mouse Button (LMB) + Drag
Rotate the view.
Shift + 🖱️ LMB + Drag
Translate the view.
Ctrl + Mousewheel
Zoom in and out.
⌨️ z
Reset view to closest
⌨️ o
Toggle between orthographic and perspective projection.
⌨️ l
Reassign random colors to neurons and ROI meshes.

Filtering

screenshot of neuroglancer filter section
1
Use text to filter neurons by type name.

2
Use tags to require or exclude neurons of certain properties, e.g. `soma_side`.

3
Add / remove matched neurons from view.

4
Remove currently selected neurons from view.

5
Toggle individual neurons from view.
?

Download neurons

Downloads one file per neuron that this page sends to the viewer (the neurons of this type plus any partners ticked in the tables below), packed into a single zip file. Neurons without a file are listed in missing_body_ids.txt inside the zip.

Format

screenshot of the 'copy URL' button in Neuroglancer Changes made inside Neuroglancer are invisible to the Cell Type Explorer. To download exactly the neurons selected in Neuroglancer, copy the URL from Neuroglancer and paste it here:

ROI Innervation (8 ROIs)

ROI Name∑
In		%
In		log
ratio		∑
Out		%
Out
ICL(R)21438.6%-2.384113.4%
SPS(R)15327.6%-0.779029.4%
SPS(L)6511.7%0.6410133.0%
IB509.0%0.195718.6%
PLP(R)447.9%-2.00113.6%
GOR(R)101.8%-1.7431.0%
SCL(R)91.6%-2.1720.7%
CentralBrain-unspecified91.6%-3.1710.3%

Connectivity

Inputs

upstream
partner		#NTconns
CB3998		%
In		CV
CL235 (L)3Glu25.59.8%0.3
CL235 (R)3Glu17.56.7%0.2
PS268 (L)3ACh176.5%0.5
WED012 (R)2GABA135.0%0.3
CL253 (R)3GABA93.4%0.8
PS269 (R)2ACh83.1%0.6
PS268 (R)3ACh83.1%0.2
CB0530 (L)1Glu7.52.9%0.0
OA-VUMa6 (M)2OA6.52.5%0.2
PS269 (L)2ACh5.52.1%0.5
AVLP486 (R)1GABA51.9%0.0
PLP019 (R)1GABA4.51.7%0.0
PS096 (R)3GABA41.5%0.5
PS097 (R)1GABA3.51.3%0.0
AN06B009 (R)1GABA31.1%0.0
GNG579 (R)1GABA31.1%0.0
PS158 (L)1ACh31.1%0.0
PS180 (R)1ACh31.1%0.0
PS096 (L)3GABA31.1%0.4
CB1833 (L)4Glu31.1%0.3
PS270 (R)1ACh2.51.0%0.0
SMP033 (R)1Glu2.51.0%0.0
PS097 (L)3GABA2.51.0%0.3
AN06B009 (L)1GABA20.8%0.0
DNp36 (R)1Glu20.8%0.0
CB2625 (L)1ACh20.8%0.0
CL046 (R)2Glu20.8%0.0
CB3998 (L)2Glu20.8%0.0
LC36 (R)3ACh20.8%0.4
LoVP18 (R)3ACh20.8%0.4
CB1833 (R)3Glu20.8%0.4
CL049 (L)2Glu20.8%0.5
GNG638 (R)1GABA1.50.6%0.0
LoVCLo1 (R)1ACh1.50.6%0.0
CL011 (R)1Glu1.50.6%0.0
CB1731 (R)1ACh1.50.6%0.0
AVLP531 (R)1GABA1.50.6%0.0
CB1353 (L)2Glu1.50.6%0.3
CL049 (R)2Glu1.50.6%0.3
LoVP26 (R)2ACh1.50.6%0.3
LoVP26 (L)2ACh1.50.6%0.3
PS158 (R)1ACh1.50.6%0.0
IB038 (R)2Glu1.50.6%0.3
CL131 (R)2ACh1.50.6%0.3
LoVC15 (R)2GABA1.50.6%0.3
OA-VUMa4 (M)2OA1.50.6%0.3
AN17A050 (R)1ACh10.4%0.0
PLP096 (R)1ACh10.4%0.0
VES001 (R)1Glu10.4%0.0
CL074 (L)1ACh10.4%0.0
CL167 (R)1ACh10.4%0.0
PLP053 (R)1ACh10.4%0.0
CL088_a (R)1ACh10.4%0.0
CL008 (R)1Glu10.4%0.0
AN09B023 (L)1ACh10.4%0.0
LoVCLo1 (L)1ACh10.4%0.0
AN08B010 (L)1ACh10.4%0.0
CL354 (R)1Glu10.4%0.0
SMP527 (R)1ACh10.4%0.0
CB2074 (R)1Glu10.4%0.0
CL270 (R)1ACh10.4%0.0
CL010 (R)1Glu10.4%0.0
PLP092 (L)1ACh10.4%0.0
AN19B017 (L)1ACh10.4%0.0
CL366 (R)1GABA10.4%0.0
CL048 (R)2Glu10.4%0.0
CB2074 (L)2Glu10.4%0.0
LAL188_a (R)1ACh10.4%0.0
CB1072 (L)2ACh10.4%0.0
PS007 (R)2Glu10.4%0.0
DNp42 (R)1ACh10.4%0.0
CB3998 (R)2Glu10.4%0.0
PS092 (R)1GABA10.4%0.0
LoVP50 (R)1ACh10.4%0.0
IB004_b (R)1Glu0.50.2%0.0
LAL025 (R)1ACh0.50.2%0.0
PLP243 (R)1ACh0.50.2%0.0
MBON03 (R)1Glu0.50.2%0.0
DNpe016 (R)1ACh0.50.2%0.0
LoVC7 (R)1GABA0.50.2%0.0
PLP218 (R)1Glu0.50.2%0.0
CB4071 (R)1ACh0.50.2%0.0
CL046 (L)1Glu0.50.2%0.0
LAL187 (L)1ACh0.50.2%0.0
CL189 (R)1Glu0.50.2%0.0
CB1269 (R)1ACh0.50.2%0.0
PLP054 (R)1ACh0.50.2%0.0
LHPV3a3_b (L)1ACh0.50.2%0.0
IB017 (R)1ACh0.50.2%0.0
GNG662 (L)1ACh0.50.2%0.0
LHPV3a1 (R)1ACh0.50.2%0.0
CB4102 (R)1ACh0.50.2%0.0
PLP056 (R)1ACh0.50.2%0.0
AVLP579 (R)1ACh0.50.2%0.0
CL314 (R)1GABA0.50.2%0.0
DNpe037 (R)1ACh0.50.2%0.0
SMP547 (R)1ACh0.50.2%0.0
PS347_b (L)1Glu0.50.2%0.0
PLP229 (R)1ACh0.50.2%0.0
PLP209 (R)1ACh0.50.2%0.0
PLP032 (R)1ACh0.50.2%0.0
LoVP101 (R)1ACh0.50.2%0.0
PS306 (R)1GABA0.50.2%0.0
DNp47 (R)1ACh0.50.2%0.0
LoVCLo3 (R)1OA0.50.2%0.0
PS005_e (R)1Glu0.50.2%0.0
PLP172 (L)1GABA0.50.2%0.0
SAD072 (L)1GABA0.50.2%0.0
SIP020_b (R)1Glu0.50.2%0.0
SMP068 (R)1Glu0.50.2%0.0
IB004_a (R)1Glu0.50.2%0.0
CB2259 (R)1Glu0.50.2%0.0
PS109 (R)1ACh0.50.2%0.0
PS007 (L)1Glu0.50.2%0.0
CL273 (R)1ACh0.50.2%0.0
CL128_c (R)1GABA0.50.2%0.0
CL128_a (R)1GABA0.50.2%0.0
LT64 (L)1ACh0.50.2%0.0
CB3466 (R)1ACh0.50.2%0.0
AVLP442 (R)1ACh0.50.2%0.0
SAD045 (L)1ACh0.50.2%0.0
CL252 (R)1GABA0.50.2%0.0
LC35a (R)1ACh0.50.2%0.0
SMP055 (L)1Glu0.50.2%0.0
PLP067 (R)1ACh0.50.2%0.0
CB2281 (R)1ACh0.50.2%0.0
AVLP166 (R)1ACh0.50.2%0.0
AN27X009 (R)1ACh0.50.2%0.0
CB2659 (R)1ACh0.50.2%0.0
PLP080 (R)1Glu0.50.2%0.0
AN27X009 (L)1ACh0.50.2%0.0
AN06B040 (R)1GABA0.50.2%0.0
PS001 (R)1GABA0.50.2%0.0
PVLP149 (R)1ACh0.50.2%0.0
PLP032 (L)1ACh0.50.2%0.0
GNG311 (L)1ACh0.50.2%0.0
PS112 (R)1Glu0.50.2%0.0
DNp69 (R)1ACh0.50.2%0.0
PLP092 (R)1ACh0.50.2%0.0
PS088 (L)1GABA0.50.2%0.0
PPL202 (R)1DA0.50.2%0.0
IB008 (L)1GABA0.50.2%0.0
5-HTPMPV03 (R)15-HT0.50.2%0.0

Outputs

downstream
partner		#NTconns
CB3998		%
Out		CV
LoVC15 (L)3GABA19.54.6%0.9
PS268 (L)4ACh18.54.4%0.5
PLP092 (R)1ACh16.53.9%0.0
PLP092 (L)1ACh153.6%0.0
IB038 (L)2Glu14.53.4%0.0
PS268 (R)4ACh143.3%0.5
LoVC15 (R)3GABA12.53.0%0.2
PS269 (L)2ACh10.52.5%0.4
CB3044 (R)2ACh9.52.3%0.1
PS002 (R)2GABA8.52.0%0.5
DNbe004 (L)1Glu8.52.0%0.0
PS112 (R)1Glu7.51.8%0.0
CL128_c (L)1GABA7.51.8%0.0
LoVC2 (L)1GABA71.7%0.0
LoVC2 (R)1GABA71.7%0.0
IB038 (R)2Glu71.7%0.0
CB3044 (L)1ACh61.4%0.0
DNp59 (R)1GABA5.51.3%0.0
CL128_b (L)1GABA5.51.3%0.0
IB008 (R)1GABA5.51.3%0.0
CB1072 (L)3ACh51.2%0.8
LoVC17 (L)1GABA4.51.1%0.0
CB1833 (R)2Glu4.51.1%0.1
PLP093 (R)1ACh41.0%0.0
CL128_c (R)1GABA41.0%0.0
DNbe004 (R)1Glu41.0%0.0
CL128_d (R)1GABA41.0%0.0
PLP208 (R)1ACh3.50.8%0.0
CL128_d (L)1GABA3.50.8%0.0
IB095 (L)1Glu3.50.8%0.0
DNa09 (R)1ACh3.50.8%0.0
PS269 (R)2ACh3.50.8%0.1
CL128_e (R)1GABA30.7%0.0
SMP543 (R)1GABA30.7%0.0
AVLP016 (R)1Glu30.7%0.0
CB1353 (L)2Glu30.7%0.7
CL128_a (R)1GABA30.7%0.0
SIP020_b (R)1Glu30.7%0.0
DNa09 (L)1ACh30.7%0.0
CL128_e (L)1GABA30.7%0.0
PLP093 (L)1ACh30.7%0.0
CB3998 (L)2Glu30.7%0.0
IB009 (L)1GABA2.50.6%0.0
PLP032 (R)1ACh2.50.6%0.0
SMP055 (R)1Glu2.50.6%0.0
IB095 (R)1Glu2.50.6%0.0
CB1353 (R)2Glu2.50.6%0.2
CB1072 (R)2ACh2.50.6%0.6
PS158 (L)1ACh2.50.6%0.0
SMP055 (L)2Glu2.50.6%0.2
CL189 (R)3Glu2.50.6%0.6
PLP032 (L)1ACh2.50.6%0.0
CL235 (R)2Glu2.50.6%0.6
PS180 (L)1ACh2.50.6%0.0
IB008 (L)1GABA20.5%0.0
PVLP100 (L)1GABA20.5%0.0
LoVP18 (R)1ACh20.5%0.0
PLP218 (R)1Glu20.5%0.0
DNp103 (R)1ACh20.5%0.0
OA-VUMa6 (M)2OA20.5%0.5
aSP22 (R)1ACh20.5%0.0
PLP163 (R)1ACh1.50.4%0.0
CB1636 (R)1Glu1.50.4%0.0
LoVC3 (R)1GABA1.50.4%0.0
AOTU033 (L)1ACh1.50.4%0.0
PS058 (L)1ACh1.50.4%0.0
PS112 (L)1Glu1.50.4%0.0
CB1833 (L)2Glu1.50.4%0.3
LAL188_b (R)1ACh1.50.4%0.0
PS002 (L)2GABA1.50.4%0.3
PS111 (R)1Glu1.50.4%0.0
CB2074 (L)2Glu1.50.4%0.3
CB2074 (R)2Glu1.50.4%0.3
CL184 (R)2Glu1.50.4%0.3
LAL141 (L)1ACh10.2%0.0
CB4071 (R)1ACh10.2%0.0
SMP459 (L)1ACh10.2%0.0
CL128_b (R)1GABA10.2%0.0
CB4102 (R)1ACh10.2%0.0
PS158 (R)1ACh10.2%0.0
CL321 (R)1ACh10.2%0.0
AOTU064 (L)1GABA10.2%0.0
PS088 (R)1GABA10.2%0.0
AOTU042 (R)1GABA10.2%0.0
LoVCLo3 (R)1OA10.2%0.0
PLP172 (L)1GABA10.2%0.0
CL323 (R)1ACh10.2%0.0
CL308 (R)1ACh10.2%0.0
CB1958 (L)1Glu10.2%0.0
PS164 (L)1GABA10.2%0.0
PS267 (R)1ACh10.2%0.0
CB4103 (L)1ACh10.2%0.0
AVLP442 (R)1ACh10.2%0.0
CB1222 (L)1ACh10.2%0.0
PS182 (R)1ACh10.2%0.0
CL029_a (R)1Glu10.2%0.0
PS180 (R)1ACh10.2%0.0
DNp07 (R)1ACh10.2%0.0
LoVC1 (L)1Glu10.2%0.0
SMP543 (L)1GABA10.2%0.0
CL251 (R)1ACh10.2%0.0
DNbe007 (L)1ACh10.2%0.0
DNp59 (L)1GABA10.2%0.0
CL048 (R)2Glu10.2%0.0
CL128a (R)2GABA10.2%0.0
DNp104 (R)1ACh10.2%0.0
CB3998 (R)2Glu10.2%0.0
CL049 (R)2Glu10.2%0.0
CL049 (L)2Glu10.2%0.0
PS005_a (R)1Glu0.50.1%0.0
PS270 (L)1ACh0.50.1%0.0
DNae009 (L)1ACh0.50.1%0.0
PLP052 (R)1ACh0.50.1%0.0
PLP218 (L)1Glu0.50.1%0.0
IB010 (L)1GABA0.50.1%0.0
PLP019 (L)1GABA0.50.1%0.0
LAL134 (L)1GABA0.50.1%0.0
CL321 (L)1ACh0.50.1%0.0
CL074 (L)1ACh0.50.1%0.0
CB4070 (R)1ACh0.50.1%0.0
IB002 (R)1Glu0.50.1%0.0
SMP381_a (R)1ACh0.50.1%0.0
LC29 (L)1ACh0.50.1%0.0
SIP020b (R)1Glu0.50.1%0.0
LAL188_b (L)1ACh0.50.1%0.0
CB1636 (L)1Glu0.50.1%0.0
PLP222 (R)1ACh0.50.1%0.0
CB3376 (L)1ACh0.50.1%0.0
CB0682 (L)1GABA0.50.1%0.0
LT35 (R)1GABA0.50.1%0.0
SMP395 (R)1ACh0.50.1%0.0
PLP009 (R)1Glu0.50.1%0.0
WED125 (L)1ACh0.50.1%0.0
WED012 (R)1GABA0.50.1%0.0
PS018_a (R)1ACh0.50.1%0.0
PS001 (R)1GABA0.50.1%0.0
CL140 (R)1GABA0.50.1%0.0
PS020 (R)1ACh0.50.1%0.0
DNpe022 (R)1ACh0.50.1%0.0
DNp09 (R)1ACh0.50.1%0.0
OA-VUMa4 (M)1OA0.50.1%0.0
DNpe056 (R)1ACh0.50.1%0.0
SAD073 (R)1GABA0.50.1%0.0
CB0530 (R)1Glu0.50.1%0.0
PS005_e (R)1Glu0.50.1%0.0
PS108 (R)1Glu0.50.1%0.0
PS146 (R)1Glu0.50.1%0.0
CL169 (R)1ACh0.50.1%0.0
SMP544 (R)1GABA0.50.1%0.0
PVLP107 (R)1Glu0.50.1%0.0
CL038 (R)1Glu0.50.1%0.0
IB009 (R)1GABA0.50.1%0.0
CB2625 (L)1ACh0.50.1%0.0
SMP048 (R)1ACh0.50.1%0.0
CB1642 (L)1ACh0.50.1%0.0
DNpe039 (R)1ACh0.50.1%0.0
CB2259 (R)1Glu0.50.1%0.0
PS109 (R)1ACh0.50.1%0.0
LAL188_a (L)1ACh0.50.1%0.0
PS149 (R)1Glu0.50.1%0.0
PS007 (L)1Glu0.50.1%0.0
CL005 (R)1ACh0.50.1%0.0
CL235 (L)1Glu0.50.1%0.0
CL184 (L)1Glu0.50.1%0.0
CB4103 (R)1ACh0.50.1%0.0
CL116 (L)1GABA0.50.1%0.0
CL176 (R)1Glu0.50.1%0.0
SMP394 (L)1ACh0.50.1%0.0
LC39a (R)1Glu0.50.1%0.0
CL168 (R)1ACh0.50.1%0.0
PS029 (R)1ACh0.50.1%0.0
DNpe053 (R)1ACh0.50.1%0.0
CB2281 (R)1ACh0.50.1%0.0
SMP185 (R)1ACh0.50.1%0.0
PS003 (R)1Glu0.50.1%0.0
DNp104 (L)1ACh0.50.1%0.0
PLP019 (R)1GABA0.50.1%0.0
CB0429 (R)1ACh0.50.1%0.0
CL319 (R)1ACh0.50.1%0.0
DNpe045 (R)1ACh0.50.1%0.0
DNp68 (R)1ACh0.50.1%0.0
DNp70 (R)1ACh0.50.1%0.0
DNp69 (R)1ACh0.50.1%0.0
DNp08 (R)1Glu0.50.1%0.0
SMP001 (R)1unc0.50.1%0.0
OA-VUMa3 (M)1OA0.50.1%0.0