Male CNS – Cell Type Explorer

CB3391(R)

5
Total Neurons
Right: 2 | Left: 3
log ratio : 0.58
1,901
Total Synapses
Post: 1,343 | Pre: 558
log ratio : -1.27
950.5
Mean Synapses
Post: 671.5 | Pre: 279
log ratio : -1.27
Glu(78.9% CL)
Neurotransmitter

Neuron Visualization

Dark Light

Navigation

🖱️ Left Mouse Button (LMB) + Drag
Rotate the view.
Shift + 🖱️ LMB + Drag
Translate the view.
Ctrl + Mousewheel
Zoom in and out.
⌨️ z
Reset view to closest
⌨️ o
Toggle between orthographic and perspective projection.
⌨️ l
Reassign random colors to neurons and ROI meshes.

Filtering

screenshot of neuroglancer filter section
1
Use text to filter neurons by type name.

2
Use tags to require or exclude neurons of certain properties, e.g. `soma_side`.

3
Add / remove matched neurons from view.

4
Remove currently selected neurons from view.

5
Toggle individual neurons from view.
?

ROI Innervation (7 ROIs)

ROI Name
In
%
In
log
ratio

Out
%
Out
SIP(R)71353.1%-0.6346082.4%
SMP(R)29221.7%-3.28305.4%
CRE(R)26719.9%-4.74101.8%
aL(R)312.3%-0.15285.0%
SLP(R)261.9%-0.31213.8%
a'L(R)70.5%0.3691.6%
CentralBrain-unspecified70.5%-inf00.0%

Connectivity

Inputs

upstream
partner
#NTconns
CB3391
%
In
CV
SIP053 (R)5ACh83.513.5%0.2
SMP012 (R)2Glu45.57.3%0.2
CRE048 (R)1Glu315.0%0.0
SIP070 (R)3ACh21.53.5%0.8
CRE042 (R)1GABA213.4%0.0
CB3391 (R)2Glu17.52.8%0.1
CB1168 (R)5Glu162.6%1.0
SIP076 (R)1ACh15.52.5%0.0
CB1434 (R)3Glu142.3%0.6
SMP058 (R)1Glu121.9%0.0
LHCENT8 (R)2GABA121.9%0.0
SIP046 (R)1Glu10.51.7%0.0
LHCENT9 (R)1GABA101.6%0.0
SMP_unclear (R)1ACh9.51.5%0.0
CB4150 (R)1ACh9.51.5%0.0
SLP247 (R)1ACh81.3%0.0
CRE055 (R)6GABA81.3%0.6
SMP059 (R)1Glu7.51.2%0.0
CRE054 (R)3GABA7.51.2%0.6
CB1841 (L)2ACh71.1%0.0
CRE003_b (R)4ACh71.1%0.7
SLP216 (R)1GABA6.51.0%0.0
SMP009 (R)1ACh61.0%0.0
CRE078 (R)2ACh5.50.9%0.5
LHPD2a4_a (R)4ACh5.50.9%0.5
LHPV5a1 (R)2ACh50.8%0.2
mALB1 (L)1GABA50.8%0.0
LHCENT1 (R)1GABA4.50.7%0.0
LHPV5g1_b (R)4ACh4.50.7%0.6
CRE056 (R)3GABA4.50.7%0.0
SMP568_b (R)2ACh40.6%0.8
CB1841 (R)2ACh40.6%0.8
SMP108 (R)1ACh40.6%0.0
SIP087 (R)1unc3.50.6%0.0
CRE003_b (L)3ACh3.50.6%0.8
SMP011_a (R)1Glu3.50.6%0.0
LHAD2b1 (R)1ACh3.50.6%0.0
CB3873 (R)2ACh3.50.6%0.7
CRE052 (R)4GABA3.50.6%0.5
SMP154 (R)1ACh30.5%0.0
SMP568_d (R)1ACh30.5%0.0
SMP568_a (R)3ACh30.5%0.7
SMP568_d (L)2ACh30.5%0.3
PPL107 (R)1DA30.5%0.0
SMP561 (L)1ACh2.50.4%0.0
CRE009 (R)1ACh2.50.4%0.0
LHAV9a1_c (R)1ACh2.50.4%0.0
SMP011_b (R)1Glu2.50.4%0.0
CRE078 (L)2ACh2.50.4%0.2
SLP451 (R)1ACh2.50.4%0.0
SMP177 (R)1ACh2.50.4%0.0
SMP009 (L)1ACh20.3%0.0
SLP328 (R)1ACh20.3%0.0
GNG322 (R)1ACh20.3%0.0
CB2846 (R)2ACh20.3%0.5
CRE076 (L)1ACh20.3%0.0
LHCENT6 (R)1GABA20.3%0.0
SMP177 (L)1ACh20.3%0.0
CB1316 (R)2Glu20.3%0.5
CRE013 (R)1GABA20.3%0.0
SIP037 (R)3Glu20.3%0.4
CB1079 (R)1GABA1.50.2%0.0
SIP028 (R)1GABA1.50.2%0.0
CB2719 (R)1ACh1.50.2%0.0
SMP258 (R)1ACh1.50.2%0.0
SMP059 (L)1Glu1.50.2%0.0
PLP161 (R)1ACh1.50.2%0.0
SLP212 (R)1ACh1.50.2%0.0
SLP451 (L)1ACh1.50.2%0.0
SMP561 (R)1ACh1.50.2%0.0
PPL104 (R)1DA1.50.2%0.0
CRE077 (R)1ACh1.50.2%0.0
SMP577 (L)1ACh1.50.2%0.0
SMP108 (L)1ACh1.50.2%0.0
LHCENT3 (R)1GABA1.50.2%0.0
SIP018 (R)1Glu1.50.2%0.0
LHPD2c2 (R)1ACh1.50.2%0.0
CB4150 (L)1ACh1.50.2%0.0
CRE009 (L)1ACh1.50.2%0.0
SIP090 (R)1ACh1.50.2%0.0
SMP382 (R)1ACh1.50.2%0.0
CB1815 (L)1Glu1.50.2%0.0
SIP027 (R)2GABA1.50.2%0.3
LHPV5e3 (R)1ACh1.50.2%0.0
LAL198 (L)1ACh1.50.2%0.0
CB2937 (R)2Glu1.50.2%0.3
CB3874 (R)2ACh1.50.2%0.3
SMP386 (R)1ACh10.2%0.0
SMP077 (R)1GABA10.2%0.0
CB1148 (R)1Glu10.2%0.0
PAM04 (R)1DA10.2%0.0
SMP145 (L)1unc10.2%0.0
SMP572 (R)1ACh10.2%0.0
CRE103 (R)1ACh10.2%0.0
SLP473 (R)1ACh10.2%0.0
LHPD5a1 (R)1Glu10.2%0.0
SMP541 (R)1Glu10.2%0.0
LAL198 (R)1ACh10.2%0.0
CB4195 (R)1Glu10.2%0.0
CB1124 (L)1GABA10.2%0.0
CB1897 (R)1ACh10.2%0.0
SMP571 (R)1ACh10.2%0.0
SMP588 (L)1unc10.2%0.0
SMP180 (R)1ACh10.2%0.0
CRE076 (R)1ACh10.2%0.0
MBON15 (R)1ACh10.2%0.0
OA-VPM3 (R)1OA10.2%0.0
CRE018 (R)2ACh10.2%0.0
LHPD4c1 (R)1ACh10.2%0.0
OA-VPM3 (L)1OA10.2%0.0
CB1926 (L)1Glu10.2%0.0
CB2584 (R)2Glu10.2%0.0
CB2357 (R)1GABA10.2%0.0
LHPD2b1 (R)2ACh10.2%0.0
SMP568_a (L)2ACh10.2%0.0
SMP384 (L)1unc10.2%0.0
OA-VUMa6 (M)2OA10.2%0.0
LHPV5g1_a (R)1ACh0.50.1%0.0
CRE095 (R)1ACh0.50.1%0.0
LHPV10d1 (R)1ACh0.50.1%0.0
SMP049 (R)1GABA0.50.1%0.0
LHPV5e1 (L)1ACh0.50.1%0.0
CRE011 (R)1ACh0.50.1%0.0
SMP050 (R)1GABA0.50.1%0.0
SIP081 (R)1ACh0.50.1%0.0
LAL037 (R)1ACh0.50.1%0.0
CRE003_a (L)1ACh0.50.1%0.0
SMP247 (R)1ACh0.50.1%0.0
LHAV9a1_c (L)1ACh0.50.1%0.0
SMP409 (R)1ACh0.50.1%0.0
CRE051 (R)1GABA0.50.1%0.0
CB1902 (R)1ACh0.50.1%0.0
CB2736 (R)1Glu0.50.1%0.0
CB1128 (R)1GABA0.50.1%0.0
SMP112 (R)1ACh0.50.1%0.0
CB3056 (R)1Glu0.50.1%0.0
CB1220 (R)1Glu0.50.1%0.0
VES040 (L)1ACh0.50.1%0.0
LHPD2a6 (R)1Glu0.50.1%0.0
GNG595 (R)1ACh0.50.1%0.0
LHAD1f3_b (R)1Glu0.50.1%0.0
CRE066 (R)1ACh0.50.1%0.0
LHAD2d1 (R)1Glu0.50.1%0.0
CB2689 (R)1ACh0.50.1%0.0
CB2549 (R)1ACh0.50.1%0.0
SMP588 (R)1unc0.50.1%0.0
ALIN3 (R)1ACh0.50.1%0.0
LHPD2d1 (R)1Glu0.50.1%0.0
CRE102 (R)1Glu0.50.1%0.0
SMP580 (R)1ACh0.50.1%0.0
SMP385 (R)1unc0.50.1%0.0
SIP087 (L)1unc0.50.1%0.0
MBON11 (R)1GABA0.50.1%0.0
LHPV10b1 (R)1ACh0.50.1%0.0
SMP146 (R)1GABA0.50.1%0.0
SMP568_b (L)1ACh0.50.1%0.0
SMP254 (L)1ACh0.50.1%0.0
MBON04 (R)1Glu0.50.1%0.0
SMP142 (R)1unc0.50.1%0.0
SMP142 (L)1unc0.50.1%0.0
SMP143 (R)1unc0.50.1%0.0
SIP071 (R)1ACh0.50.1%0.0
SMP151 (L)1GABA0.50.1%0.0
PPL104 (L)1DA0.50.1%0.0
SMP115 (L)1Glu0.50.1%0.0
LAL110 (R)1ACh0.50.1%0.0
PAM03 (R)1DA0.50.1%0.0
SMP453 (R)1Glu0.50.1%0.0
CRE057 (R)1GABA0.50.1%0.0
LAL110 (L)1ACh0.50.1%0.0
SMP509 (R)1ACh0.50.1%0.0
CB3339 (R)1ACh0.50.1%0.0
CB1956 (R)1ACh0.50.1%0.0
SMP180 (L)1ACh0.50.1%0.0
SIP074_b (R)1ACh0.50.1%0.0
CB4197 (R)1Glu0.50.1%0.0
LHAD1c2 (R)1ACh0.50.1%0.0
SIP047 (R)1ACh0.50.1%0.0
SIP042_a (R)1Glu0.50.1%0.0
LHPV5g2 (R)1ACh0.50.1%0.0
SIP041 (R)1Glu0.50.1%0.0
CB2310 (R)1ACh0.50.1%0.0
SMP443 (R)1Glu0.50.1%0.0
AVLP497 (R)1ACh0.50.1%0.0
SMP562 (L)1ACh0.50.1%0.0
CRE103 (L)1ACh0.50.1%0.0
LHPD2a1 (R)1ACh0.50.1%0.0
CB1454 (R)1GABA0.50.1%0.0
SLP021 (R)1Glu0.50.1%0.0
FB4C (R)1Glu0.50.1%0.0
LAL114 (R)1ACh0.50.1%0.0
SMP115 (R)1Glu0.50.1%0.0
SMP184 (L)1ACh0.50.1%0.0
SMP116 (L)1Glu0.50.1%0.0
SLP242 (R)1ACh0.50.1%0.0
SMP143 (L)1unc0.50.1%0.0
SMP198 (R)1Glu0.50.1%0.0
LHPD2c7 (R)1Glu0.50.1%0.0
MBON24 (R)1ACh0.50.1%0.0
CL021 (R)1ACh0.50.1%0.0
LHAV3m1 (R)1GABA0.50.1%0.0
PPL102 (R)1DA0.50.1%0.0
LHPV5e1 (R)1ACh0.50.1%0.0
LAL182 (R)1ACh0.50.1%0.0
MBON01 (R)1Glu0.50.1%0.0

Outputs

downstream
partner
#NTconns
CB3391
%
Out
CV
SIP070 (R)3ACh105.516.0%0.2
SIP053 (R)5ACh10315.7%0.2
CB1168 (R)5Glu8613.1%0.3
SLP328 (R)1ACh34.55.2%0.0
CB3396 (R)1Glu284.3%0.0
CRE048 (R)1Glu243.6%0.0
SIP066 (R)2Glu19.53.0%0.2
SMP541 (R)1Glu17.52.7%0.0
CB3391 (R)2Glu17.52.7%0.1
SIP071 (R)2ACh162.4%0.9
SIP037 (R)3Glu162.4%0.4
SIP076 (R)6ACh15.52.4%1.2
SLP130 (R)1ACh11.51.7%0.0
CB2584 (R)2Glu10.51.6%0.0
SLP279 (R)1Glu9.51.4%0.0
GNG322 (R)1ACh7.51.1%0.0
SMP_unclear (R)1ACh7.51.1%0.0
SLP129_c (R)3ACh5.50.8%0.3
CB4150 (R)1ACh50.8%0.0
oviIN (R)1GABA50.8%0.0
SMP084 (R)2Glu40.6%0.8
CB4150 (L)1ACh40.6%0.0
SIP042_a (R)1Glu3.50.5%0.0
FB4C (R)1Glu3.50.5%0.0
SMP006 (R)1ACh30.5%0.0
CB1902 (L)1ACh30.5%0.0
SLP217 (R)2Glu30.5%0.0
CB3874 (R)2ACh30.5%0.7
CRE096 (L)1ACh30.5%0.0
CB3339 (R)1ACh2.50.4%0.0
SMP012 (R)2Glu2.50.4%0.2
CB1220 (R)2Glu2.50.4%0.2
SMP258 (R)1ACh20.3%0.0
CB2689 (R)1ACh20.3%0.0
SIP047 (R)1ACh20.3%0.0
CL040 (R)1Glu20.3%0.0
SMP114 (L)1Glu1.50.2%0.0
CRE018 (R)1ACh1.50.2%0.0
SMP085 (R)1Glu1.50.2%0.0
SMP084 (L)1Glu1.50.2%0.0
CB3339 (L)1ACh1.50.2%0.0
CB3874 (L)1ACh1.50.2%0.0
SIP087 (R)1unc1.50.2%0.0
CB1197 (R)1Glu1.50.2%0.0
SMP476 (R)2ACh1.50.2%0.3
SLP230 (R)1ACh1.50.2%0.0
FB1H (R)1DA10.2%0.0
PAM04 (R)1DA10.2%0.0
SMP059 (R)1Glu10.2%0.0
LHPV5a1 (R)1ACh10.2%0.0
SMP561 (L)1ACh10.2%0.0
SMP385 (R)1unc10.2%0.0
SIP046 (R)1Glu10.2%0.0
CRE042 (R)1GABA10.2%0.0
MBON33 (R)1ACh10.2%0.0
FB5Z (R)1Glu10.2%0.0
CRE081 (R)1ACh10.2%0.0
SLP451 (R)1ACh10.2%0.0
SLP247 (R)1ACh10.2%0.0
LHCENT8 (R)1GABA10.2%0.0
OA-VPM3 (R)1OA10.2%0.0
SMP247 (R)2ACh10.2%0.0
SMP112 (R)2ACh10.2%0.0
CB1434 (R)2Glu10.2%0.0
PAM10 (R)1DA10.2%0.0
SMP143 (R)2unc10.2%0.0
SMP336 (R)1Glu10.2%0.0
LHAV3m1 (R)1GABA10.2%0.0
LHAV9a1_b (R)1ACh0.50.1%0.0
LHPV5g1_b (R)1ACh0.50.1%0.0
SMP190 (R)1ACh0.50.1%0.0
LAL034 (R)1ACh0.50.1%0.0
SMP389_a (R)1ACh0.50.1%0.0
CRE020 (R)1ACh0.50.1%0.0
SIP042_b (R)1Glu0.50.1%0.0
CB4197 (R)1Glu0.50.1%0.0
CB2736 (R)1Glu0.50.1%0.0
CB3399 (R)1Glu0.50.1%0.0
CB1316 (R)1Glu0.50.1%0.0
LHAD3g1 (R)1Glu0.50.1%0.0
LHPD2a4_a (R)1ACh0.50.1%0.0
SLP022 (R)1Glu0.50.1%0.0
CB2116 (R)1Glu0.50.1%0.0
CB2787 (R)1ACh0.50.1%0.0
SMP509 (R)1ACh0.50.1%0.0
FB4Q_a (R)1Glu0.50.1%0.0
SLP473 (R)1ACh0.50.1%0.0
SMP715m (R)1ACh0.50.1%0.0
SMP185 (R)1ACh0.50.1%0.0
SMP553 (R)1Glu0.50.1%0.0
LHCENT1 (R)1GABA0.50.1%0.0
SIP087 (L)1unc0.50.1%0.0
LHCENT9 (R)1GABA0.50.1%0.0
SMP568_b (L)1ACh0.50.1%0.0
SMP503 (R)1unc0.50.1%0.0
FB6O (R)1Glu0.50.1%0.0
LHCENT3 (R)1GABA0.50.1%0.0
SMP082 (R)1Glu0.50.1%0.0
SMP077 (R)1GABA0.50.1%0.0
CB1815 (L)1Glu0.50.1%0.0
LHAV9a1_a (R)1ACh0.50.1%0.0
SIP028 (L)1GABA0.50.1%0.0
CB3052 (L)1Glu0.50.1%0.0
SIP003_a (R)1ACh0.50.1%0.0
CB2937 (R)1Glu0.50.1%0.0
SMP126 (L)1Glu0.50.1%0.0
CB3362 (L)1Glu0.50.1%0.0
SMP150 (R)1Glu0.50.1%0.0
FB2C (R)1Glu0.50.1%0.0
CRE096 (R)1ACh0.50.1%0.0
CB1841 (L)1ACh0.50.1%0.0
CRE095 (R)1ACh0.50.1%0.0
SMP713m (R)1ACh0.50.1%0.0
SMP131 (L)1Glu0.50.1%0.0
SMP443 (R)1Glu0.50.1%0.0
CB2719 (R)1ACh0.50.1%0.0
SMP562 (L)1ACh0.50.1%0.0
LHAD1f3_b (R)1Glu0.50.1%0.0
SMP567 (R)1ACh0.50.1%0.0
FB5Y_b (R)1Glu0.50.1%0.0
SMP508 (R)1ACh0.50.1%0.0
PPL104 (R)1DA0.50.1%0.0
MBON24 (R)1ACh0.50.1%0.0
PPL107 (R)1DA0.50.1%0.0
LHAD1f2 (R)1Glu0.50.1%0.0
SMP457 (R)1ACh0.50.1%0.0
SMP179 (R)1ACh0.50.1%0.0
mALB1 (L)1GABA0.50.1%0.0
PPL201 (R)1DA0.50.1%0.0