Male CNS – Cell Type Explorer

C2(R)

1745
Neurons
Right: 874 | Left: 871
log ratio : -0.00
145,854
Synapses
Post: 103,316 | Pre: 42,538
log ratio : -1.28
224,360
Connections
Upstream: 100,242 | Downstream: 124,118
log ratio : 0.31
GABA (53.6% CL)
Neurotransmitter
166.9
Synapses per Neuron
Post: 118.2 | Pre: 48.7
log ratio : -1.28
256.7
Connections per Neuron
Upstream: 114.7 | Downstream: 142.0
log ratio : 0.31

Mean Synapse Count per Layer

 
Post
Pre
LA
6.9
4.5
ME 1ME 2ME 3ME 4ME 5ME 6ME 7ME 8ME 9ME 10Total
37.82.41.77.321.36.53.813.83.632.5130.5
31.84.20.40.00.10.00.00.00.00.136.8
 
Post
Pre
LO 1LO 2LO 3LO 4LO 5ALO 5BLO 6Total
--1--1--
--------
AME
1.5
-
 
Post
Pre
LOP 1LOP 2LOP 3LOP 4Total
2.3---2.3
0.3---0.3
central brain
-
-

Population spatial coverage

Neuron Visualization

Dark Light

Navigation

🖱️ Left Mouse Button (LMB) + Drag
Rotate the view.
Shift + 🖱️ LMB + Drag
Translate the view.
Ctrl + Mousewheel
Zoom in and out.
⌨️ z
Reset view to closest
⌨️ o
Toggle between orthographic and perspective projection.
⌨️ l
Reassign random colors to neurons and ROI meshes.

Filtering

screenshot of neuroglancer filter section
1
Use text to filter neurons by type name.

2
Use tags to require or exclude neurons of certain properties, e.g. `soma_side`.

3
Add / remove matched neurons from view.

4
Remove currently selected neurons from view.

5
Toggle individual neurons from view.
?

ROI Innervation (6 ROIs)

ROI Name
In
%
In
log
ratio

Out
%
Out
ME(R)98,55195.4%-1.7329,76270.0%
Optic-unspecified(R)2,2562.2%2.3011,13226.2%
LA(R)2,4962.4%-0.611,6413.9%
LOP(R)70.0%-2.8110.0%
AME(R)30.0%-inf00.0%
LO(R)20.0%-inf00.0%

Connectivity

Inputs

upstream
partner
#NTconns
C2
%
In
CV
L1 (R)891Glu32.628.5%0.3
Mi1 (R)886ACh27.824.3%0.5
L5 (R)897ACh24.921.7%0.6
Pm12 (R)2GABA8.57.4%0.1
Tm4 (R)537ACh2.52.2%0.8
MeVPOL1 (L)1ACh2.52.1%0.0
MeVCMe1 (R)2ACh2.01.7%0.1
MeVCMe1 (L)2ACh1.41.3%0.1
Y3 (R)256ACh1.00.9%0.7
Lawf2 (R)48ACh1.00.8%0.8
MeVPOL1 (R)1ACh0.90.8%0.0
MeVC26 (L)1ACh0.70.6%0.0
Pm10 (R)35GABA0.60.5%0.6
MeVC12 (L)1ACh0.60.5%0.0
Pm13 (R)1Glu0.50.5%0.0
aMe17c (R)2Glu0.40.3%0.1
LC14b (L)17ACh0.40.3%0.6
R8_unclear127HA0.30.3%0.6
C3 (R)212GABA0.30.3%0.5
L3 (R)213ACh0.30.3%0.5
R8p114HA0.30.3%0.7
L2 (R)166ACh0.20.2%0.4
R8y127HA0.20.2%0.5
T4b (R)146ACh0.20.2%0.7
Dm9 (R)78Glu0.20.2%0.7
Tm3 (R)121ACh0.20.1%0.5
MeVC6 (L)1ACh0.10.1%0.0
T4a (R)103ACh0.10.1%0.5
T1 (R)84HA0.10.1%0.7
T4c (R)87ACh0.10.1%0.5
MeLo9 (R)37Glu0.10.1%0.7
Dm1 (R)34Glu0.10.1%0.6
Mi9 (R)52Glu0.10.1%0.7
Lawf1 (R)45ACh0.10.1%1.1
MeVC5 (L)1ACh0.10.1%0.0
R1-R664HA0.10.1%0.4
MeVC1 (L)1ACh0.10.1%0.0
Mi19 (R)5unc0.10.1%0.6
TmY14 (R)51unc0.10.1%0.5
T4d (R)68ACh0.10.1%0.2
Pm9 (R)19GABA0.10.1%0.9
TmY18 (R)63ACh0.10.1%0.3
Mi4 (R)62GABA0.10.1%0.3
L4 (R)55ACh0.10.1%0.5
MeVPMe3 (L)1Glu0.10.1%0.0
Mi2 (R)45Glu0.10.1%0.6
TmY15 (R)37GABA0.10.1%0.6
CT1 (L)1GABA0.10.1%0.0
aMe4 (R)8ACh0.10.1%0.4
T2a (R)33ACh0.10.1%1.1
R7_unclear36HA0.10.1%0.6
MeVC11 (L)1ACh0.10.1%0.0
T2 (R)43ACh0.10.1%0.6
MeVC9 (L)1ACh0.00.0%0.0
Mi15 (R)31ACh0.00.0%0.6
R7p30HA0.00.0%0.4
Dm8a (R)19Glu0.00.0%0.9
Dm8b (R)24Glu0.00.0%0.4
C2 (R)21GABA0.00.0%1.2
R7y27HA0.00.0%0.3
Dm2 (R)18ACh0.00.0%0.7
Mi10 (R)27ACh0.00.0%0.2
MeVC3 (L)1ACh0.00.0%0.0
Cm7 (R)18Glu0.00.0%0.7
T3 (R)21ACh0.00.0%0.7
TmY17 (R)20ACh0.00.0%1.0
Dm10 (R)22GABA0.00.0%0.4
TmY19a (R)18GABA0.00.0%0.7
MeVPMe12 (L)2ACh0.00.0%0.2
Dm11 (R)16Glu0.00.0%0.3
Tm16 (R)6ACh0.00.0%1.1
TmY5a (R)20Glu0.00.0%0.6
Dm18 (R)16GABA0.00.0%0.4
MeVP3 (R)4ACh0.00.0%1.4
Tm39 (R)9ACh0.00.0%1.0
MeVC10 (L)1ACh0.00.0%0.0
TmY3 (R)17ACh0.00.0%0.4
Pm3 (R)9GABA0.00.0%0.8
OA-AL2i3 (R)2OA0.00.0%0.4
Lai (R)12Glu0.00.0%0.5
LPi2e (R)1Glu0.00.0%0.0
R7d13HA0.00.0%0.5
Pm7 (R)10GABA0.00.0%0.5
l-LNv (R)3unc0.00.0%0.5
MeVC4b (L)1ACh0.00.0%0.0
l-LNv (L)4unc0.00.0%0.6
Mi13 (R)13Glu0.00.0%0.5
Tm20 (R)14ACh0.00.0%0.3
R8d12HA0.00.0%0.5
MeVP4 (R)3ACh0.00.0%1.1
TmY21 (R)5ACh0.00.0%0.8
MeLo1 (R)13ACh0.00.0%0.2
OA-AL2i1 (R)1unc0.00.0%0.0
Dm6 (R)10Glu0.00.0%0.5
MeLo14 (R)9Glu0.00.0%0.5
MeLo13 (R)9Glu0.00.0%0.3
Cm8 (R)2GABA0.00.0%0.8
Tm2 (R)6ACh0.00.0%0.8
Pm2a (R)8GABA0.00.0%0.5
Cm1 (R)7ACh0.00.0%1.0
Pm4 (R)9GABA0.00.0%0.5
DNp30 (L)1Glu0.00.0%0.0
OA-AL2i2 (R)2OA0.00.0%0.5
Tm1 (R)12ACh0.00.0%0.0
Tm29 (R)1Glu0.00.0%0.0
MeVPMe2 (R)4Glu0.00.0%0.3
Dm-DRA1 (R)5Glu0.00.0%0.9
Tm6 (R)11ACh0.00.0%0.0
Tm5c (R)11Glu0.00.0%0.0
MeVPMe6 (L)1Glu0.00.0%0.0
PVLP046 (L)2GABA0.00.0%0.2
Cm34 (R)1Glu0.00.0%0.0
Mi14 (R)9Glu0.00.0%0.3
Pm1 (R)10GABA0.00.0%0.0
TmY10 (R)8ACh0.00.0%0.3
Cm21 (R)6GABA0.00.0%0.5
Dm20 (R)7Glu0.00.0%0.5
MeLo8 (R)5GABA0.00.0%0.8
Cm10 (R)5GABA0.00.0%0.3
aMe30 (R)2Glu0.00.0%0.7
Am1 (R)1GABA0.00.0%0.0
Mi16 (R)7GABA0.00.0%0.0
Mi18 (R)7GABA0.00.0%0.0
Dm17 (R)4Glu0.00.0%0.5
MeVC2 (L)1ACh0.00.0%0.0
DNp30 (R)1Glu0.00.0%0.0
Dm-DRA2 (R)3Glu0.00.0%0.4
Tm12 (R)5ACh0.00.0%0.3
OLVC3 (L)1ACh0.00.0%0.0
MeLo2 (R)6ACh0.00.0%0.0
Tm37 (R)6Glu0.00.0%0.0
TmY4 (R)6ACh0.00.0%0.0
MeVC25 (R)1Glu0.00.0%0.0
MeLo7 (R)4ACh0.00.0%0.3
TmY13 (R)4ACh0.00.0%0.3
Cm11a (R)3ACh0.00.0%0.3
TmY16 (R)4Glu0.00.0%0.3
MeLo10 (R)5Glu0.00.0%0.0
TmY9b (R)4ACh0.00.0%0.3
Cm13 (R)5Glu0.00.0%0.0
R7R8_unclear1HA0.00.0%0.0
MeVPMe2 (L)1Glu0.00.0%0.0
Tm5b (R)3ACh0.00.0%0.4
Tm33 (R)3ACh0.00.0%0.4
OA-ASM1 (L)2OA0.00.0%0.5
MeLo12 (R)3Glu0.00.0%0.4
MeVP9 (R)3ACh0.00.0%0.4
Pm8 (R)4GABA0.00.0%0.0
Dm13 (R)4GABA0.00.0%0.0
Tm9 (R)4ACh0.00.0%0.0
Pm11 (R)2GABA0.00.0%0.5
MeVP8 (R)3ACh0.00.0%0.4
Dm3b (R)4Glu0.00.0%0.0
Dm3c (R)4Glu0.00.0%0.0
Cm11c (R)3ACh0.00.0%0.4
TmY9a (R)4ACh0.00.0%0.0
MeVC22 (R)1Glu0.00.0%0.0
aMe6b (R)1ACh0.00.0%0.0
Dm16 (R)2Glu0.00.0%0.3
aMe17e (R)1Glu0.00.0%0.0
5-HTPMPV03 (L)15-HT0.00.0%0.0
Dm12 (R)3Glu0.00.0%0.0
Pm5 (R)3GABA0.00.0%0.0
MeVPLp2 (R)1Glu0.00.0%0.0
Y13 (R)3Glu0.00.0%0.0
Cm3 (R)3GABA0.00.0%0.0
Y12 (R)3Glu0.00.0%0.0
MeVPMe1 (L)2Glu0.00.0%0.3
MeVP14 (R)1ACh0.00.0%0.0
OLVC2 (L)1GABA0.00.0%0.0
MeVPMe12 (R)1ACh0.00.0%0.0
LA_ME_unclear (R)1ACh0.00.0%0.0
LPi3412 (R)1Glu0.00.0%0.0
Tm31 (R)1GABA0.00.0%0.0
LT58 (R)1Glu0.00.0%0.0
MeVP1 (R)1ACh0.00.0%0.0
OLVC5 (R)1ACh0.00.0%0.0
Dm15 (R)2Glu0.00.0%0.0
Dm3a (R)2Glu0.00.0%0.0
DNc02 (L)1unc0.00.0%0.0
MeVPLo2 (R)2ACh0.00.0%0.0
Pm2b (R)2GABA0.00.0%0.0
Y14 (R)2Glu0.00.0%0.0
Tm26 (R)2ACh0.00.0%0.0
Cm2 (R)2ACh0.00.0%0.0
Cm28 (R)1Glu0.00.0%0.0
Cm4 (R)2Glu0.00.0%0.0
Cm31b (R)1GABA0.00.0%0.0
MeVPMe13 (L)1ACh0.00.0%0.0
Cm27 (R)1Glu0.00.0%0.0
MeVC21 (R)1Glu0.00.0%0.0
MeLo11 (R)2Glu0.00.0%0.0
Cm9 (R)1Glu0.00.0%0.0
MeVPMe9 (L)1Glu0.00.0%0.0
Dm19 (R)1Glu0.00.0%0.0
TmY19b (R)1GABA0.00.0%0.0
MeVPLo1 (R)1Glu0.00.0%0.0
MeVP11 (R)1ACh0.00.0%0.0
MeVP28 (R)1ACh0.00.0%0.0
Tm5a (R)1ACh0.00.0%0.0
MeVP7 (R)1ACh0.00.0%0.0
Tm36 (R)1ACh0.00.0%0.0
Cm35 (R)1GABA0.00.0%0.0
TmY20 (R)1ACh0.00.0%0.0
LoVC21 (L)1GABA0.00.0%0.0
Dm14 (R)1Glu0.00.0%0.0
Cm6 (R)1GABA0.00.0%0.0
MeVPMe1 (R)1Glu0.00.0%0.0
MeTu1 (R)1ACh0.00.0%0.0
5-HTPMPV03 (R)15-HT0.00.0%0.0
aMe5 (R)1ACh0.00.0%0.0
Tm5Y (R)1ACh0.00.0%0.0
Mi17 (R)1GABA0.00.0%0.0
Dm4 (R)1Glu0.00.0%0.0
Pm6 (R)1GABA0.00.0%0.0
MeVPMe5 (L)1Glu0.00.0%0.0
Cm_unclear (R)1ACh0.00.0%0.0
MeVPMe4 (L)1Glu0.00.0%0.0
OA-ASM1 (R)1OA0.00.0%0.0
Cm5 (R)1GABA0.00.0%0.0
DNc01 (L)1unc0.00.0%0.0
Y11 (R)1Glu0.00.0%0.0
MeVP10 (R)1ACh0.00.0%0.0
MeVC23 (R)1Glu0.00.0%0.0
MeLo6 (R)1ACh0.00.0%0.0
AN09A005 (R)1unc0.00.0%0.0
MeTu4a (R)1ACh0.00.0%0.0
MeVP2 (R)1ACh0.00.0%0.0

Outputs

downstream
partner
#NTconns
C2
%
Out
CV
L1 (R)890Glu28.219.8%0.3
L5 (R)898ACh23.416.5%0.3
L2 (R)891ACh22.015.5%0.4
L3 (R)881ACh11.88.3%0.5
L4 (R)887ACh10.47.3%0.4
Mi1 (R)883ACh10.27.2%0.4
T1 (R)847HA4.63.2%0.6
Tm1 (R)828ACh4.33.1%0.6
Mi15 (R)485ACh3.62.5%0.7
Tm9 (R)595ACh2.61.8%0.7
Dm9 (R)134Glu2.41.7%0.7
Dm20 (R)48Glu1.91.4%0.4
Mi2 (R)430Glu1.81.3%0.7
Dm18 (R)27GABA1.71.2%0.3
T2 (R)613ACh1.71.2%0.6
Mi18 (R)36GABA1.41.0%0.3
Mi4 (R)434GABA1.20.9%0.7
C3 (R)434GABA0.80.6%0.6
R8_unclear177HA0.70.5%0.6
R8p137HA0.60.4%0.6
Tm3 (R)328ACh0.50.4%0.6
Tm16 (R)107ACh0.50.3%0.7
R7_unclear144HA0.50.3%0.6
R8y181HA0.40.3%0.6
R7p124HA0.40.3%0.7
Dm1 (R)39Glu0.40.2%0.6
Tm37 (R)122Glu0.30.2%0.6
Tm6 (R)194ACh0.30.2%0.6
TmY5a (R)160Glu0.30.2%0.6
Mi14 (R)100Glu0.20.2%0.6
Tm5c (R)104Glu0.20.1%0.7
Tm20 (R)127ACh0.20.1%0.6
Dm11 (R)55Glu0.20.1%0.8
Mi9 (R)112Glu0.20.1%0.5
Lai (R)33Glu0.20.1%0.7
MeLo2 (R)44ACh0.20.1%0.6
Tm12 (R)99ACh0.10.1%0.5
TmY18 (R)84ACh0.10.1%0.7
R7y72HA0.10.1%0.6
Tm4 (R)73ACh0.10.1%0.6
Lawf2 (R)51ACh0.10.1%0.6
T4c (R)29ACh0.10.1%1.3
Dm6 (R)25Glu0.10.1%0.7
T4a (R)17ACh0.10.1%1.1
Lawf1 (R)43ACh0.10.0%0.6
T4d (R)19ACh0.10.0%1.1
TmY3 (R)45ACh0.10.0%0.4
Tm2 (R)41ACh0.10.0%0.4
T4b (R)14ACh0.00.0%0.8
R7d26HA0.00.0%0.5
MeLo1 (R)24ACh0.00.0%0.5
R8d23HA0.00.0%0.4
C2 (R)23GABA0.00.0%0.8
R1-R625HA0.00.0%0.4
Mi13 (R)21Glu0.00.0%1.0
aMe6c (R)1Glu0.00.0%0.0
Dm4 (R)8Glu0.00.0%1.2
Dm10 (R)17GABA0.00.0%0.3
R7R8_unclear6HA0.00.0%0.7
Dm2 (R)14ACh0.00.0%0.5
aMe30 (R)2Glu0.00.0%0.1
R1-R6 (R)2HA0.00.0%0.4
Y3 (R)7ACh0.00.0%0.7
OA-AL2i3 (R)2OA0.00.0%0.4
TmY19a (R)8GABA0.00.0%0.6
TmY15 (R)8GABA0.00.0%0.5
T2a (R)11ACh0.00.0%0.3
Mi19 (R)5unc0.00.0%0.6
l-LNv (R)1unc0.00.0%0.0
Dm17 (R)3Glu0.00.0%0.4
Pm3 (R)7GABA0.00.0%0.4
TmY14 (R)9unc0.00.0%0.0
Dm3b (R)3Glu0.00.0%0.8
CT1 (L)1GABA0.00.0%0.0
Dm14 (R)4Glu0.00.0%0.3
MeVC1 (L)1ACh0.00.0%0.0
MeVP11 (R)5ACh0.00.0%0.3
Cm2 (R)4ACh0.00.0%0.3
MeLo9 (R)5Glu0.00.0%0.3
Dm3c (R)6Glu0.00.0%0.0
Pm12 (R)2GABA0.00.0%0.6
TmY17 (R)3ACh0.00.0%0.3
MeVP51 (R)1Glu0.00.0%0.0
MeVPOL1 (L)1ACh0.00.0%0.0
MeVCMe1 (L)2ACh0.00.0%0.2
MeVCMe1 (R)2ACh0.00.0%0.2
Dm12 (R)3Glu0.00.0%0.4
Dm16 (R)3Glu0.00.0%0.4
aMe3 (R)1Glu0.00.0%0.0
LC14b (L)3ACh0.00.0%0.4
R7_unclear (R)1HA0.00.0%0.0
Dm19 (R)1Glu0.00.0%0.0
MeVP9 (R)1ACh0.00.0%0.0
Dm15 (R)2Glu0.00.0%0.3
MeVPLp1 (R)1ACh0.00.0%0.0
T3 (R)3ACh0.00.0%0.0
Dm3a (R)3Glu0.00.0%0.0
MeVP8 (R)3ACh0.00.0%0.0
aMe6b (R)1ACh0.00.0%0.0
Pm8 (R)1GABA0.00.0%0.0
Dm13 (R)1GABA0.00.0%0.0
Am1 (R)1GABA0.00.0%0.0
Cm3 (R)2GABA0.00.0%0.0
TmY9a (R)2ACh0.00.0%0.0
Pm11 (R)2GABA0.00.0%0.0
l-LNv (L)1unc0.00.0%0.0
Mi10 (R)2ACh0.00.0%0.0
Mi16 (R)2GABA0.00.0%0.0
TmY9b (R)2ACh0.00.0%0.0
TmY21 (R)2ACh0.00.0%0.0
Pm2a (R)2GABA0.00.0%0.0
Pm2b (R)2GABA0.00.0%0.0
Tm34 (R)1Glu0.00.0%0.0
Y12 (R)1Glu0.00.0%0.0
MeVPMe2 (L)1Glu0.00.0%0.0
Cm1 (R)1ACh0.00.0%0.0
Tm26 (R)1ACh0.00.0%0.0
MeLo6 (R)1ACh0.00.0%0.0
Cm11b (R)1ACh0.00.0%0.0
Pm5 (R)1GABA0.00.0%0.0
MeVPMe12 (L)1ACh0.00.0%0.0
Dm8a (R)1Glu0.00.0%0.0
MeVPMe1 (L)1Glu0.00.0%0.0
Tm32 (R)1Glu0.00.0%0.0
Pm4 (R)1GABA0.00.0%0.0
Pm9 (R)1GABA0.00.0%0.0
Cm35 (R)1GABA0.00.0%0.0
Pm1 (R)1GABA0.00.0%0.0
Pm10 (R)1GABA0.00.0%0.0
MeLo7 (R)1ACh0.00.0%0.0
MeVP24 (R)1ACh0.00.0%0.0
Tm36 (R)1ACh0.00.0%0.0
Pm6 (R)1GABA0.00.0%0.0
Tm39 (R)1ACh0.00.0%0.0
TmY20 (R)1ACh0.00.0%0.0
TmY4 (R)1ACh0.00.0%0.0
MeVC12 (L)1ACh0.00.0%0.0
MeVC26 (L)1ACh0.00.0%0.0
MeVC11 (L)1ACh0.00.0%0.0
Tm33 (R)1ACh0.00.0%0.0
Tm24 (R)1ACh0.00.0%0.0
Tm35 (R)1Glu0.00.0%0.0
TmY13 (R)1ACh0.00.0%0.0